{"id":"https://openalex.org/W2974794749","doi":"https://doi.org/10.1093/bioinformatics/btz705","title":"Biogenesis mechanisms of circular RNA can be categorized through feature extraction of a machine learning model","display_name":"Biogenesis mechanisms of circular RNA can be categorized through feature extraction of a machine learning model","publication_year":2019,"publication_date":"2019-09-12","ids":{"openalex":"https://openalex.org/W2974794749","doi":"https://doi.org/10.1093/bioinformatics/btz705","mag":"2974794749","pmid":"https://pubmed.ncbi.nlm.nih.gov/31529043"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz705","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz705","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/23/4867/31279693/btz705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/23/4867/31279693/btz705.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100321180","display_name":"Chengyu Liu","orcid":"https://orcid.org/0009-0000-1342-920X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chengyu Liu","raw_affiliation_strings":["Department of Chemistry and Biochemistry"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100373049","display_name":"Yu\u2010Chen Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"Yu-Chen Liu","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, National Chiao Tung University , HsinChu, Taiwan","Institute of Engineering in Medicine, University of California , San Diego, La Jolla, CA, USA","Institute of Pharmacology, National Yang-Ming University , Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University , HsinChu, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Engineering in Medicine, University of California , San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Institute of Pharmacology, National Yang-Ming University , Taipei, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040277769","display_name":"Hsien\u2010Da Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210102541","display_name":"Shenzhen Bay Laboratory","ror":"https://ror.org/00sdcjz77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102541"]},{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hsien-Da Huang","raw_affiliation_strings":["School of Life and Health Sciences","Shenzhen Bay Laboratory , Nanshan District, Shenzhen, Guangdong Province, China","Warshel Institute for Computational Biology, The Chinese University of Hong Kong , Shenzhen, Longgang District, Shenzhen, Guangdong Province, China"],"affiliations":[{"raw_affiliation_string":"School of Life and Health Sciences","institution_ids":[]},{"raw_affiliation_string":"Shenzhen Bay Laboratory , Nanshan District, Shenzhen, Guangdong Province, China","institution_ids":["https://openalex.org/I4210102541"]},{"raw_affiliation_string":"Warshel Institute for Computational Biology, The Chinese University of Hong Kong , Shenzhen, Longgang District, Shenzhen, Guangdong Province, China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100392000","display_name":"Wei Wang","orcid":"https://orcid.org/0000-0002-5273-3332"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Wei Wang","raw_affiliation_strings":["Department of Chemistry and Biochemistry"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100392000"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1135,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.7770268,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"35","issue":"23","first_page":"4867","last_page":"4870"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biogenesis","display_name":"Biogenesis","score":0.9104741811752319},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6821694374084473},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6481767296791077},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.6130985617637634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5732636451721191},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.48097503185272217},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.41181570291519165},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3298119306564331}],"concepts":[{"id":"https://openalex.org/C131934819","wikidata":"https://www.wikidata.org/wiki/Q135390","display_name":"Biogenesis","level":3,"score":0.9104741811752319},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6821694374084473},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6481767296791077},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.6130985617637634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5732636451721191},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.48097503185272217},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41181570291519165},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3298119306564331}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz705","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz705","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/23/4867/31279693/btz705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31529043","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31529043","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5867850","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6901070","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz705","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz705","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/23/4867/31279693/btz705.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7818932889","display_name":null,"funder_award_id":"HG009626","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2974794749.pdf","grobid_xml":"https://content.openalex.org/works/W2974794749.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1566841623","https://openalex.org/W1770991729","https://openalex.org/W1828537510","https://openalex.org/W1846631206","https://openalex.org/W1966557314","https://openalex.org/W1967791012","https://openalex.org/W1981726010","https://openalex.org/W1991082489","https://openalex.org/W1993529637","https://openalex.org/W1999560226","https://openalex.org/W2019230794","https://openalex.org/W2023139734","https://openalex.org/W2027347575","https://openalex.org/W2034305079","https://openalex.org/W2039764922","https://openalex.org/W2051615060","https://openalex.org/W2054891772","https://openalex.org/W2055493067","https://openalex.org/W2058835062","https://openalex.org/W2087016914","https://openalex.org/W2105694586","https://openalex.org/W2109393499","https://openalex.org/W2115662330","https://openalex.org/W2116041602","https://openalex.org/W2126938291","https://openalex.org/W2147625377","https://openalex.org/W2147806662","https://openalex.org/W2149574104","https://openalex.org/W2152719653","https://openalex.org/W2174483798","https://openalex.org/W2194134194","https://openalex.org/W2196247406","https://openalex.org/W2233603983","https://openalex.org/W2261488440","https://openalex.org/W2302185643","https://openalex.org/W2314489585","https://openalex.org/W2316171452","https://openalex.org/W2427407580","https://openalex.org/W2464424326","https://openalex.org/W2508597987","https://openalex.org/W2623141677","https://openalex.org/W2768485889","https://openalex.org/W2787788280"],"related_works":["https://openalex.org/W4303945781","https://openalex.org/W2024248021","https://openalex.org/W2323385078","https://openalex.org/W3083494250","https://openalex.org/W3174330474","https://openalex.org/W2883062882","https://openalex.org/W4321459884","https://openalex.org/W2893572166","https://openalex.org/W2971531865","https://openalex.org/W4388307780"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
