{"id":"https://openalex.org/W2971690321","doi":"https://doi.org/10.1093/bioinformatics/btz695","title":"NERDD: a web portal providing access to <i>in silico</i> tools for drug discovery","display_name":"NERDD: a web portal providing access to <i>in silico</i> tools for drug discovery","publication_year":2019,"publication_date":"2019-09-04","ids":{"openalex":"https://openalex.org/W2971690321","doi":"https://doi.org/10.1093/bioinformatics/btz695","mag":"2971690321","pmid":"https://pubmed.ncbi.nlm.nih.gov/32077475"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1291/32527810/btz695.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1291/32527810/btz695.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043723616","display_name":"Conrad Stork","orcid":"https://orcid.org/0000-0002-5499-742X"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Conrad Stork","raw_affiliation_strings":["Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064314834","display_name":"Gerd Embruch","orcid":null},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gerd Embruch","raw_affiliation_strings":["Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063973687","display_name":"Martin \u0160\u00edcho","orcid":"https://orcid.org/0000-0002-8771-1731"},"institutions":[{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Martin \u0160\u00edcho","raw_affiliation_strings":["Department of Informatics and Chemistry, CZ-OPENSCREEN: National Infrastructure for Chemical Biology, University of Chemistry and Technology Prague, Faculty of Chemical Technology , 166 28 Prague 6, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Informatics and Chemistry, CZ-OPENSCREEN: National Infrastructure for Chemical Biology, University of Chemistry and Technology Prague, Faculty of Chemical Technology , 166 28 Prague 6, Czech Republic","institution_ids":["https://openalex.org/I9073902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034475539","display_name":"Christina de Bruyn Kops","orcid":"https://orcid.org/0000-0001-8890-2137"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christina de Bruyn Kops","raw_affiliation_strings":["Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062698299","display_name":"Ya Chen","orcid":"https://orcid.org/0000-0001-5273-1815"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ya Chen","raw_affiliation_strings":["Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082393460","display_name":"Daniel Svozil","orcid":"https://orcid.org/0000-0003-2577-5163"},"institutions":[{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Daniel Svozil","raw_affiliation_strings":["Department of Informatics and Chemistry, CZ-OPENSCREEN: National Infrastructure for Chemical Biology, University of Chemistry and Technology Prague, Faculty of Chemical Technology , 166 28 Prague 6, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Informatics and Chemistry, CZ-OPENSCREEN: National Infrastructure for Chemical Biology, University of Chemistry and Technology Prague, Faculty of Chemical Technology , 166 28 Prague 6, Czech Republic","institution_ids":["https://openalex.org/I9073902"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065353728","display_name":"Johannes Kirchmair","orcid":"https://orcid.org/0000-0003-2667-5877"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]},{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE","NO"],"is_corresponding":true,"raw_author_name":"Johannes Kirchmair","raw_affiliation_strings":["Computational Biology Unit (CBU) , Bergen N-5020, Norway","Department of Chemistry, University of Bergen , Bergen N-5020, Norway","Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Biology Unit (CBU) , Bergen N-5020, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Chemistry, University of Bergen , Bergen N-5020, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Informatics, Universit\u00e4t Hamburg, Faculty of Mathematics, Informatics and Natural Sciences, Center for Bioinformatics (ZBH) , Hamburg 20146, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5065353728"],"corresponding_institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4432739"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.6256,"has_fulltext":false,"cited_by_count":85,"citation_normalized_percentile":{"value":0.9640177,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"36","issue":"4","first_page":"1291","last_page":"1292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6970767378807068},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6448609232902527},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6191290616989136},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.581091582775116},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.5165428519248962},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45611995458602905},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4260268211364746},{"id":"https://openalex.org/keywords/natural-product","display_name":"Natural product","score":0.4203135371208191},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.26112183928489685},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21207085251808167},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1747722625732422},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13541772961616516}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6970767378807068},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6448609232902527},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6191290616989136},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.581091582775116},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.5165428519248962},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45611995458602905},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4260268211364746},{"id":"https://openalex.org/C2779396153","wikidata":"https://www.wikidata.org/wiki/Q901227","display_name":"Natural product","level":2,"score":0.4203135371208191},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.26112183928489685},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21207085251808167},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1747722625732422},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13541772961616516},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1291/32527810/btz695.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32077475","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32077475","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1291/32527810/btz695.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2146235501","display_name":null,"funder_award_id":"201606010345","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G4521197033","display_name":null,"funder_award_id":"BFS2017TMT01","funder_id":"https://openalex.org/F4320323898","funder_display_name":"Bergens Forskningsstiftelse"}],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320323898","display_name":"Bergens Forskningsstiftelse","ror":"https://ror.org/04efaep75"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2971690321.pdf","grobid_xml":"https://content.openalex.org/works/W2971690321.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W2043509228","https://openalex.org/W2168480393","https://openalex.org/W2463036497","https://openalex.org/W2751692355","https://openalex.org/W2772275705","https://openalex.org/W2811354933","https://openalex.org/W2910793948","https://openalex.org/W2911366920","https://openalex.org/W2950863675","https://openalex.org/W2965877034"],"related_works":["https://openalex.org/W4402084195","https://openalex.org/W1964657534","https://openalex.org/W2933530798","https://openalex.org/W2070692310","https://openalex.org/W4200184670","https://openalex.org/W4376484878","https://openalex.org/W4327862425","https://openalex.org/W2584285938","https://openalex.org/W3201311513","https://openalex.org/W4367601179"],"abstract_inverted_index":{"The":[0],"NERDD":[1],"web":[2],"server":[3],"is":[4],"available":[5,12],"at":[6],"https://nerdd.zbh.uni-hamburg.de.":[7],"Most":[8],"tools":[9],"are":[10],"also":[11],"as":[13],"software":[14],"packages":[15],"for":[16],"local":[17],"installation.":[18]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":15},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2019-09-12T00:00:00"}
