{"id":"https://openalex.org/W4238420558","doi":"https://doi.org/10.1093/bioinformatics/btz582","title":"amplimap: a versatile tool to process and analyze targeted NGS data","display_name":"amplimap: a versatile tool to process and analyze targeted NGS data","publication_year":2019,"publication_date":"2019-07-24","ids":{"openalex":"https://openalex.org/W4238420558","doi":"https://doi.org/10.1093/bioinformatics/btz582","pmid":"https://pubmed.ncbi.nlm.nih.gov/31350555"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz582","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5349/31797999/btz582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5349/31797999/btz582.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014320231","display_name":"Nils Koelling","orcid":"https://orcid.org/0000-0001-5292-4510"},"institutions":[{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Nils Koelling","raw_affiliation_strings":["Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090206205","display_name":"Marie Bernkopf","orcid":"https://orcid.org/0000-0001-6650-4592"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Marie Bernkopf","raw_affiliation_strings":["Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060666103","display_name":"Eduardo Calpena","orcid":"https://orcid.org/0000-0001-6399-6528"},"institutions":[{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Eduardo Calpena","raw_affiliation_strings":["Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008646471","display_name":"Geoffrey J. Maher","orcid":"https://orcid.org/0000-0001-7135-4824"},"institutions":[{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Geoffrey J Maher","raw_affiliation_strings":["Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086286355","display_name":"Kerry A. Miller","orcid":"https://orcid.org/0000-0003-2278-155X"},"institutions":[{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kerry A Miller","raw_affiliation_strings":["Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046447820","display_name":"H. Ralph","orcid":"https://orcid.org/0000-0003-2598-554X"},"institutions":[{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hannah K Ralph","raw_affiliation_strings":["Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065672403","display_name":"Anne Goriely","orcid":"https://orcid.org/0000-0001-9229-7216"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anne Goriely","raw_affiliation_strings":["Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015376243","display_name":"Andrew O.M. Wilkie","orcid":"https://orcid.org/0000-0002-2972-5481"},"institutions":[{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew O M Wilkie","raw_affiliation_strings":["Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine , University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5014320231"],"corresponding_institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210110594"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":1069,"currency":"EUR","value_usd":1152},"fwci":0.41220403,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.60341254,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":97},"biblio":{"volume":"35","issue":"24","first_page":"5349","last_page":"5350"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.8505449891090393},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.791952908039093},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7747460603713989},{"id":"https://openalex.org/keywords/amplicon","display_name":"Amplicon","score":0.6470587253570557},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6017290949821472},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5795962810516357},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5794617533683777},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5663026571273804},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.39513736963272095},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3607408404350281},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.30062687397003174},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15696832537651062},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.10105520486831665},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09615659713745117}],"concepts":[{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.8505449891090393},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.791952908039093},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7747460603713989},{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.6470587253570557},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6017290949821472},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5795962810516357},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5794617533683777},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5663026571273804},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.39513736963272095},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3607408404350281},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.30062687397003174},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15696832537651062},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.10105520486831665},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09615659713745117},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz582","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5349/31797999/btz582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31350555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31350555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5908717","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6954648","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/72396","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/72396","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"5350","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz582","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/24/5349/31797999/btz582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5423162409","display_name":null,"funder_award_id":"105361","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8979996711","display_name":null,"funder_award_id":"102731","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4238420558.pdf","grobid_xml":"https://content.openalex.org/works/W4238420558.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1999790790","https://openalex.org/W2110417468","https://openalex.org/W2344368224","https://openalex.org/W2466381441","https://openalex.org/W2644197970","https://openalex.org/W2726121306","https://openalex.org/W2792407191","https://openalex.org/W2805234304","https://openalex.org/W2952956750","https://openalex.org/W4239632189"],"related_works":["https://openalex.org/W3120493416","https://openalex.org/W4309247532","https://openalex.org/W2098192829","https://openalex.org/W632256878","https://openalex.org/W2491403535","https://openalex.org/W2479811461","https://openalex.org/W2113128227","https://openalex.org/W3096946169","https://openalex.org/W2104915799","https://openalex.org/W4311938462"],"abstract_inverted_index":{"Abstract":[0],"Summary":[1],"amplimap":[2,31,64,96],"is":[3,97],"a":[4,100],"command-line":[5],"tool":[6],"to":[7,57],"automate":[8],"the":[9,105],"processing":[10],"and":[11,44,48,62,81,94,113],"analysis":[12],"of":[13,90],"data":[14],"from":[15],"targeted":[16],"next-generation":[17],"sequencing":[18,29],"experiments":[19],"with":[20],"PCR-based":[21],"amplicons":[22],"or":[23],"capture-based":[24],"enrichment":[25],"systems.":[26],"From":[27],"raw":[28],"reads,":[30],"generates":[32],"output":[33],"such":[34,68],"as":[35,69,99],"read":[36,74],"alignments,":[37],"annotated":[38],"variant":[39,45,85],"calls,":[40],"target":[41,52],"coverage":[42],"statistics":[43],"allele":[46],"counts":[47],"frequencies":[49],"for":[50,73],"each":[51],"base":[53,71],"pair.":[54],"In":[55],"addition":[56],"its":[58],"focus":[59],"on":[60,77],"user-friendliness":[61],"reproducibility,":[63],"supports":[65],"advanced":[66],"features":[67],"consensus":[70],"calling":[72],"families":[75],"based":[76],"unique":[78],"molecular":[79],"identifiers":[80],"filtering":[82],"false":[83],"positive":[84],"calls":[86],"caused":[87],"by":[88],"amplification":[89],"off-target":[91],"loci.":[92],"Availability":[93],"implementation":[95],"available":[98,117],"free":[101],"Python":[102],"package":[103],"under":[104],"open-source":[106],"Apache":[107],"2.0":[108],"License.":[109],"Documentation,":[110],"source":[111],"code":[112],"installation":[114],"instructions":[115],"are":[116],"at":[118],"https://github.com/koelling/amplimap.":[119]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2025-10-10T00:00:00"}