{"id":"https://openalex.org/W2944974555","doi":"https://doi.org/10.1093/bioinformatics/btz411","title":"ReSimNet: drug response similarity prediction using Siamese neural networks","display_name":"ReSimNet: drug response similarity prediction using Siamese neural networks","publication_year":2019,"publication_date":"2019-05-16","ids":{"openalex":"https://openalex.org/W2944974555","doi":"https://doi.org/10.1093/bioinformatics/btz411","mag":"2944974555","pmid":"https://pubmed.ncbi.nlm.nih.gov/31116384"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz411","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz411","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003685784","display_name":"Minji Jeon","orcid":"https://orcid.org/0000-0001-5731-6186"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Minji Jeon","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054245349","display_name":"Donghyeon Park","orcid":"https://orcid.org/0000-0003-2762-3737"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Donghyeon Park","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002413587","display_name":"Jinhyuk Lee","orcid":"https://orcid.org/0000-0003-4972-239X"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jinhyuk Lee","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110703095","display_name":"Hwisang Jeon","orcid":null},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hwisang Jeon","raw_affiliation_strings":["Interdisciplinary Graduate Program in Bioinformatics, Korea University , Seoul 02841, South Korea"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114099779","display_name":"Miyoung Ko","orcid":null},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Miyoung Ko","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000850685","display_name":"Sunkyu Kim","orcid":"https://orcid.org/0000-0002-0240-6210"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunkyu Kim","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101960398","display_name":"Yonghwa Choi","orcid":"https://orcid.org/0000-0001-5709-9898"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yonghwa Choi","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019556057","display_name":"Aik Choon Tan","orcid":"https://orcid.org/0000-0003-2955-8369"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aik-Choon Tan","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, Translational Bioinformatics and Cancer Systems Biology Laboratory, University of Colorado Anschutz Medical Campus , Aurora, CO 12801, USA"],"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, Translational Bioinformatics and Cancer Systems Biology Laboratory, University of Colorado Anschutz Medical Campus , Aurora, CO 12801, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076917278","display_name":"Jaewoo Kang","orcid":"https://orcid.org/0000-0001-6798-9106"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jaewoo Kang","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea","Interdisciplinary Graduate Program in Bioinformatics, Korea University , Seoul 02841, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University , Seoul 02841, South Korea","institution_ids":["https://openalex.org/I197347611"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5076917278"],"corresponding_institution_ids":["https://openalex.org/I197347611"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.3843,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.97575036,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"35","issue":"24","first_page":"5249","last_page":"5256"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9578999876976013,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7295713424682617},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6520129442214966},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6149851083755493},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5704115033149719},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.45057564973831177},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4461621940135956},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3535504639148712},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3514997363090515},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18108847737312317},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.0983518660068512}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7295713424682617},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6520129442214966},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6149851083755493},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5704115033149719},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.45057564973831177},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4461621940135956},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3535504639148712},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3514997363090515},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18108847737312317},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0983518660068512},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz411","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz411","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31116384","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31116384","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6738373512","display_name":null,"funder_award_id":"C1202-18-1001","funder_id":"https://openalex.org/F4320310848","funder_display_name":"Ministry of Health and Welfare"},{"id":"https://openalex.org/G8100908729","display_name":null,"funder_award_id":"NRF-2016M3A9A7916996","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G8433063994","display_name":null,"funder_award_id":"NRF-2017M3C4A7065887","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320310848","display_name":"Ministry of Health and Welfare","ror":"https://ror.org/024w0ge69"},{"id":"https://openalex.org/F4320322065","display_name":"National IT Industry Promotion Agency","ror":"https://ror.org/026v53e29"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1738019091","https://openalex.org/W1757990252","https://openalex.org/W1978777023","https://openalex.org/W2007667104","https://openalex.org/W2010544748","https://openalex.org/W2040631966","https://openalex.org/W2043360059","https://openalex.org/W2046589863","https://openalex.org/W2049799328","https://openalex.org/W2063065419","https://openalex.org/W2064675550","https://openalex.org/W2088540000","https://openalex.org/W2100929382","https://openalex.org/W2112411768","https://openalex.org/W2121604817","https://openalex.org/W2129860849","https://openalex.org/W2166550586","https://openalex.org/W2189911347","https://openalex.org/W2214665483","https://openalex.org/W2237633597","https://openalex.org/W2471196942","https://openalex.org/W2533611849","https://openalex.org/W2540388793","https://openalex.org/W2540540415","https://openalex.org/W2565684601","https://openalex.org/W2592742128","https://openalex.org/W2612467560","https://openalex.org/W2735246657","https://openalex.org/W2766178498","https://openalex.org/W2775061087","https://openalex.org/W2777416523","https://openalex.org/W2793608852","https://openalex.org/W2796168562","https://openalex.org/W2803098868","https://openalex.org/W2896631891","https://openalex.org/W3100438611","https://openalex.org/W3191740793","https://openalex.org/W6631190155","https://openalex.org/W6637865168","https://openalex.org/W6688357764","https://openalex.org/W6750138833","https://openalex.org/W6785393302"],"related_works":["https://openalex.org/W4206379684","https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W2012019886","https://openalex.org/W2166090428","https://openalex.org/W2381021552","https://openalex.org/W2354749003","https://openalex.org/W2366105490","https://openalex.org/W2377121353","https://openalex.org/W2580680567"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
