{"id":"https://openalex.org/W2953607540","doi":"https://doi.org/10.1093/bioinformatics/btz326","title":"Robust network inference using response logic","display_name":"Robust network inference using response logic","publication_year":2019,"publication_date":"2019-05-09","ids":{"openalex":"https://openalex.org/W2953607540","doi":"https://doi.org/10.1093/bioinformatics/btz326","mag":"2953607540","pmid":"https://pubmed.ncbi.nlm.nih.gov/31510692"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz326","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz326","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i634/28913677/btz326.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i634/28913677/btz326.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089733382","display_name":"Torsten Gro\u00df","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Torsten Gross","raw_affiliation_strings":["Berlin Institute of Health, Berlin, Germany","IRI Life Sciences, Humboldt Universit\u00e4t zu Berlin, Berlin","Institut f\u00fcr Pathologie, Charit\u00e9\u2014Universit\u00e4tsmedizin, Berlin"],"affiliations":[{"raw_affiliation_string":"Berlin Institute of Health, Berlin, Germany","institution_ids":["https://openalex.org/I4210139777"]},{"raw_affiliation_string":"IRI Life Sciences, Humboldt Universit\u00e4t zu Berlin, Berlin","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Institut f\u00fcr Pathologie, Charit\u00e9\u2014Universit\u00e4tsmedizin, Berlin","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001032099","display_name":"Matthew Wongchenko","orcid":"https://orcid.org/0000-0003-1230-7117"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Matthew J Wongchenko","raw_affiliation_strings":["Oncology Biomarker Development, Genentech Inc., South San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Oncology Biomarker Development, Genentech Inc., South San Francisco, CA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110967023","display_name":"Yibing Yan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yibing Yan","raw_affiliation_strings":["Oncology Biomarker Development, Genentech Inc., South San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Oncology Biomarker Development, Genentech Inc., South San Francisco, CA, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078717142","display_name":"Nils Bl\u00fcthgen","orcid":"https://orcid.org/0000-0002-0171-7447"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Nils Bl\u00fcthgen","raw_affiliation_strings":["Berlin Institute of Health, Berlin, Germany","IRI Life Sciences, Humboldt Universit\u00e4t zu Berlin, Berlin","Institut f\u00fcr Pathologie, Charit\u00e9\u2014Universit\u00e4tsmedizin, Berlin"],"affiliations":[{"raw_affiliation_string":"Berlin Institute of Health, Berlin, Germany","institution_ids":["https://openalex.org/I4210139777"]},{"raw_affiliation_string":"IRI Life Sciences, Humboldt Universit\u00e4t zu Berlin, Berlin","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Institut f\u00fcr Pathologie, Charit\u00e9\u2014Universit\u00e4tsmedizin, Berlin","institution_ids":["https://openalex.org/I7877124"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5078717142"],"corresponding_institution_ids":["https://openalex.org/I39343248","https://openalex.org/I4210139777","https://openalex.org/I7877124"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5966,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.66413709,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"35","issue":"14","first_page":"i634","last_page":"i642"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9807000160217285,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.771073579788208},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6858345866203308},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6815498471260071},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.500171422958374},{"id":"https://openalex.org/keywords/answer-set-programming","display_name":"Answer set programming","score":0.49793267250061035},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4697713553905487},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4383726119995117},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39474835991859436},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34399479627609253},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34243711829185486},{"id":"https://openalex.org/keywords/logic-programming","display_name":"Logic programming","score":0.2370004951953888},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2211318016052246},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1505044400691986},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13973349332809448}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.771073579788208},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6858345866203308},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6815498471260071},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.500171422958374},{"id":"https://openalex.org/C182620335","wikidata":"https://www.wikidata.org/wiki/Q2852531","display_name":"Answer set programming","level":3,"score":0.49793267250061035},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4697713553905487},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4383726119995117},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39474835991859436},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34399479627609253},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34243711829185486},{"id":"https://openalex.org/C128838566","wikidata":"https://www.wikidata.org/wiki/Q275603","display_name":"Logic programming","level":2,"score":0.2370004951953888},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2211318016052246},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1505044400691986},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13973349332809448},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz326","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz326","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i634/28913677/btz326.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31510692","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31510692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5588721","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6612863","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz326","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz326","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i634/28913677/btz326.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G5302700050","display_name":null,"funder_award_id":"RTG2424","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7825398958","display_name":null,"funder_award_id":"GRK1772","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320329666","display_name":"Berlin Institute of Health","ror":"https://ror.org/0493xsw21"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953607540.pdf","grobid_xml":"https://content.openalex.org/works/W2953607540.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1482532598","https://openalex.org/W1587925072","https://openalex.org/W1606891084","https://openalex.org/W1807981783","https://openalex.org/W1893022572","https://openalex.org/W1971161234","https://openalex.org/W1978394237","https://openalex.org/W1985884134","https://openalex.org/W1986050428","https://openalex.org/W1986688807","https://openalex.org/W2013942866","https://openalex.org/W2031285837","https://openalex.org/W2073307618","https://openalex.org/W2083278075","https://openalex.org/W2092211394","https://openalex.org/W2099380913","https://openalex.org/W2105129830","https://openalex.org/W2110920860","https://openalex.org/W2116357670","https://openalex.org/W2136760727","https://openalex.org/W2139439234","https://openalex.org/W2148469226","https://openalex.org/W2156061761","https://openalex.org/W2157121418","https://openalex.org/W2161409973","https://openalex.org/W2161922735","https://openalex.org/W2167680767","https://openalex.org/W2171063580","https://openalex.org/W2175677210","https://openalex.org/W2178225550","https://openalex.org/W2191825358","https://openalex.org/W2311221011","https://openalex.org/W2312454132","https://openalex.org/W2465367340","https://openalex.org/W2559588208","https://openalex.org/W2763558783","https://openalex.org/W2804213591","https://openalex.org/W2808879853","https://openalex.org/W2809083472","https://openalex.org/W2896080372","https://openalex.org/W4232120991","https://openalex.org/W4242836717"],"related_works":["https://openalex.org/W3023169329","https://openalex.org/W2782165897","https://openalex.org/W2054104202","https://openalex.org/W2139703748","https://openalex.org/W2761254753","https://openalex.org/W2188981919","https://openalex.org/W3084909426","https://openalex.org/W25922586","https://openalex.org/W3213706029","https://openalex.org/W4367860297"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
