{"id":"https://openalex.org/W2955690154","doi":"https://doi.org/10.1093/bioinformatics/btz324","title":"SCRIBER: accurate and partner type-specific prediction of protein-binding residues from proteins sequences","display_name":"SCRIBER: accurate and partner type-specific prediction of protein-binding residues from proteins sequences","publication_year":2019,"publication_date":"2019-05-09","ids":{"openalex":"https://openalex.org/W2955690154","doi":"https://doi.org/10.1093/bioinformatics/btz324","mag":"2955690154","pmid":"https://pubmed.ncbi.nlm.nih.gov/31510679"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz324","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i343/28913514/btz324.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i343/28913514/btz324.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038902147","display_name":"Jian Zhang","orcid":"https://orcid.org/0000-0003-2338-0395"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I130750295","display_name":"Xinyang Normal University","ror":"https://ror.org/0190x2a66","country_code":"CN","type":"education","lineage":["https://openalex.org/I130750295"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jian Zhang","raw_affiliation_strings":["Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA","School of Computer and Information Technology, Xinyang Normal University, Xinyang, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA","institution_ids":["https://openalex.org/I184840846"]},{"raw_affiliation_string":"School of Computer and Information Technology, Xinyang Normal University, Xinyang, China","institution_ids":["https://openalex.org/I130750295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088423732","display_name":"Lukasz Kurgan","orcid":"https://orcid.org/0000-0002-7749-0314"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lukasz Kurgan","raw_affiliation_strings":["Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA","institution_ids":["https://openalex.org/I184840846"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5088423732"],"corresponding_institution_ids":["https://openalex.org/I184840846"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.2848,"has_fulltext":false,"cited_by_count":154,"citation_normalized_percentile":{"value":0.96660234,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"35","issue":"14","first_page":"i343","last_page":"i353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/type","display_name":"Type (biology)","score":0.5195682048797607},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4877672791481018},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41410893201828003},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2507128119468689}],"concepts":[{"id":"https://openalex.org/C2777299769","wikidata":"https://www.wikidata.org/wiki/Q3707858","display_name":"Type (biology)","level":2,"score":0.5195682048797607},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4877672791481018},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41410893201828003},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2507128119468689},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz324","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i343/28913514/btz324.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31510679","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31510679","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5588742","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6612887","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz324","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/14/i343/28913514/btz324.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1261969788","display_name":null,"funder_award_id":"61802329","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2791899800","display_name":null,"funder_award_id":"1617369","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5707252495","display_name":null,"funder_award_id":"192102310478","funder_id":"https://openalex.org/F4320327051","funder_display_name":"Science and Technology Department of Henan Province"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327051","display_name":"Science and Technology Department of Henan Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2955690154.pdf","grobid_xml":"https://content.openalex.org/works/W2955690154.grobid-xml"},"referenced_works_count":90,"referenced_works":["https://openalex.org/W1647947836","https://openalex.org/W1683278196","https://openalex.org/W1829437510","https://openalex.org/W1901968134","https://openalex.org/W1933350383","https://openalex.org/W1964084224","https://openalex.org/W1964555160","https://openalex.org/W1964880253","https://openalex.org/W1967668937","https://openalex.org/W1968278549","https://openalex.org/W1989949705","https://openalex.org/W1993856052","https://openalex.org/W2004377868","https://openalex.org/W2006398943","https://openalex.org/W2009672036","https://openalex.org/W2009768397","https://openalex.org/W2015802360","https://openalex.org/W2017230497","https://openalex.org/W2018661561","https://openalex.org/W2026794525","https://openalex.org/W2032929074","https://openalex.org/W2043338013","https://openalex.org/W2049127887","https://openalex.org/W2051210555","https://openalex.org/W2058017150","https://openalex.org/W2063025054","https://openalex.org/W2076052898","https://openalex.org/W2080167197","https://openalex.org/W2092123736","https://openalex.org/W2095650841","https://openalex.org/W2099386490","https://openalex.org/W2103485392","https://openalex.org/W2103505761","https://openalex.org/W2108134720","https://openalex.org/W2109300715","https://openalex.org/W2110304798","https://openalex.org/W2110705561","https://openalex.org/W2113985551","https://openalex.org/W2118737745","https://openalex.org/W2119948329","https://openalex.org/W2125987228","https://openalex.org/W2127771490","https://openalex.org/W2127982146","https://openalex.org/W2128413613","https://openalex.org/W2130479394","https://openalex.org/W2141343226","https://openalex.org/W2141627824","https://openalex.org/W2145382385","https://openalex.org/W2151412657","https://openalex.org/W2155194485","https://openalex.org/W2158714788","https://openalex.org/W2169802764","https://openalex.org/W2178290447","https://openalex.org/W2183771695","https://openalex.org/W2192578595","https://openalex.org/W2207875562","https://openalex.org/W2218000956","https://openalex.org/W2223549968","https://openalex.org/W2264362083","https://openalex.org/W2270702445","https://openalex.org/W2280888683","https://openalex.org/W2333587122","https://openalex.org/W2342374505","https://openalex.org/W2403509525","https://openalex.org/W2413107225","https://openalex.org/W2420922808","https://openalex.org/W2545255051","https://openalex.org/W2582176104","https://openalex.org/W2607138189","https://openalex.org/W2619445271","https://openalex.org/W2722005050","https://openalex.org/W2739999456","https://openalex.org/W2743276286","https://openalex.org/W2751808960","https://openalex.org/W2766389776","https://openalex.org/W2772417595","https://openalex.org/W2772865572","https://openalex.org/W2799775198","https://openalex.org/W2810225085","https://openalex.org/W2885015404","https://openalex.org/W2885244288","https://openalex.org/W2892720054","https://openalex.org/W2896074317","https://openalex.org/W2898402099","https://openalex.org/W6688921892","https://openalex.org/W6713290060","https://openalex.org/W6732748968","https://openalex.org/W6743410771","https://openalex.org/W6746260625","https://openalex.org/W6755031919"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":34},{"year":2023,"cited_by_count":31},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
