{"id":"https://openalex.org/W2937172564","doi":"https://doi.org/10.1093/bioinformatics/btz273","title":"Fast detection of maximal exact matches via fixed sampling of query<i>K</i>-mers and Bloom filtering of index<i>K</i>-mers","display_name":"Fast detection of maximal exact matches via fixed sampling of query<i>K</i>-mers and Bloom filtering of index<i>K</i>-mers","publication_year":2019,"publication_date":"2019-04-11","ids":{"openalex":"https://openalex.org/W2937172564","doi":"https://doi.org/10.1093/bioinformatics/btz273","mag":"2937172564","pmid":"https://pubmed.ncbi.nlm.nih.gov/30994891"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz273","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz273","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018620403","display_name":"Yuansheng Liu","orcid":"https://orcid.org/0000-0002-7680-3155"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yuansheng Liu","raw_affiliation_strings":["Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney , NSW 2007, Australia"],"affiliations":[{"raw_affiliation_string":"Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney , NSW 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015011245","display_name":"Leo Yu Zhang","orcid":"https://orcid.org/0000-0001-9330-2662"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Leo Yu Zhang","raw_affiliation_strings":["School of Information Technology, Deakin University , VIC 3216, Australia"],"affiliations":[{"raw_affiliation_string":"School of Information Technology, Deakin University , VIC 3216, Australia","institution_ids":["https://openalex.org/I149704539"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017861049","display_name":"Jinyan Li","orcid":"https://orcid.org/0000-0003-1833-7413"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jinyan Li","raw_affiliation_strings":["Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney , NSW 2007, Australia"],"affiliations":[{"raw_affiliation_string":"Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney , NSW 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5017861049"],"corresponding_institution_ids":["https://openalex.org/I114017466"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4569,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.91554501,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"22","first_page":"4560","last_page":"4567"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bloom-filter","display_name":"Bloom filter","score":0.911476731300354},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6948220133781433},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.6116735339164734},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6052994728088379},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.5095024704933167},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.5071213245391846},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.46199679374694824},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.43123120069503784},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4194902777671814},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4172515273094177},{"id":"https://openalex.org/keywords/hash-table","display_name":"Hash table","score":0.41146230697631836},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36484938859939575},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.32695773243904114},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32217270135879517},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2003464698791504},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10352244973182678}],"concepts":[{"id":"https://openalex.org/C147224247","wikidata":"https://www.wikidata.org/wiki/Q885373","display_name":"Bloom filter","level":2,"score":0.911476731300354},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6948220133781433},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.6116735339164734},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6052994728088379},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.5095024704933167},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.5071213245391846},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.46199679374694824},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.43123120069503784},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4194902777671814},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4172515273094177},{"id":"https://openalex.org/C67388219","wikidata":"https://www.wikidata.org/wiki/Q207440","display_name":"Hash table","level":3,"score":0.41146230697631836},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36484938859939575},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.32695773243904114},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32217270135879517},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2003464698791504},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10352244973182678},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz273","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz273","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30994891","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30994891","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1573352354","https://openalex.org/W1879624628","https://openalex.org/W1993284846","https://openalex.org/W2001079689","https://openalex.org/W2096128575","https://openalex.org/W2107282968","https://openalex.org/W2114013334","https://openalex.org/W2119372415","https://openalex.org/W2121530737","https://openalex.org/W2123845384","https://openalex.org/W2128591967","https://openalex.org/W2130062792","https://openalex.org/W2134283755","https://openalex.org/W2139523073","https://openalex.org/W2143531254","https://openalex.org/W2144560237","https://openalex.org/W2148425737","https://openalex.org/W2156658871","https://openalex.org/W2158874082","https://openalex.org/W2163584430","https://openalex.org/W2171196697","https://openalex.org/W2346241034","https://openalex.org/W2463091895","https://openalex.org/W2463351297","https://openalex.org/W2635555833","https://openalex.org/W2792368734","https://openalex.org/W2810570362","https://openalex.org/W2899544675","https://openalex.org/W2952232663","https://openalex.org/W2963360182","https://openalex.org/W7074103310"],"related_works":["https://openalex.org/W2227807207","https://openalex.org/W2370014100","https://openalex.org/W1852009617","https://openalex.org/W3137108924","https://openalex.org/W2042819006","https://openalex.org/W4287264924","https://openalex.org/W1979110442","https://openalex.org/W2170165007","https://openalex.org/W2156660460","https://openalex.org/W2362866566"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2019-04-25T00:00:00"}
