{"id":"https://openalex.org/W2921372942","doi":"https://doi.org/10.1093/bioinformatics/btz165","title":"PyFeat: a Python-based effective feature generation tool for DNA, RNA and protein sequences","display_name":"PyFeat: a Python-based effective feature generation tool for DNA, RNA and protein sequences","publication_year":2019,"publication_date":"2019-03-06","ids":{"openalex":"https://openalex.org/W2921372942","doi":"https://doi.org/10.1093/bioinformatics/btz165","mag":"2921372942","pmid":"https://pubmed.ncbi.nlm.nih.gov/30850831"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz165","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/19/3831/48977358/bioinformatics_35_19_3831.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/19/3831/48977358/bioinformatics_35_19_3831.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021925012","display_name":"Rafsanjani Muhammod","orcid":"https://orcid.org/0000-0001-6415-172X"},"institutions":[{"id":"https://openalex.org/I63169043","display_name":"United International University","ror":"https://ror.org/01tqv1p28","country_code":"BD","type":"education","lineage":["https://openalex.org/I63169043"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Rafsanjani Muhammod","raw_affiliation_strings":["Department of Computer Science and Engineering, United International University , Dhaka, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, United International University , Dhaka, Bangladesh","institution_ids":["https://openalex.org/I63169043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077829984","display_name":"Sajid Ahmed","orcid":"https://orcid.org/0000-0003-0762-4468"},"institutions":[{"id":"https://openalex.org/I63169043","display_name":"United International University","ror":"https://ror.org/01tqv1p28","country_code":"BD","type":"education","lineage":["https://openalex.org/I63169043"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Sajid Ahmed","raw_affiliation_strings":["Department of Computer Science and Engineering, United International University , Dhaka, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, United International University , Dhaka, Bangladesh","institution_ids":["https://openalex.org/I63169043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030913401","display_name":"Dewan Md. Farid","orcid":"https://orcid.org/0000-0002-6413-4898"},"institutions":[{"id":"https://openalex.org/I63169043","display_name":"United International University","ror":"https://ror.org/01tqv1p28","country_code":"BD","type":"education","lineage":["https://openalex.org/I63169043"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Dewan Md Farid","raw_affiliation_strings":["Department of Computer Science and Engineering, United International University , Dhaka, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, United International University , Dhaka, Bangladesh","institution_ids":["https://openalex.org/I63169043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067504579","display_name":"Swakkhar Shatabda","orcid":"https://orcid.org/0000-0003-0669-072X"},"institutions":[{"id":"https://openalex.org/I63169043","display_name":"United International University","ror":"https://ror.org/01tqv1p28","country_code":"BD","type":"education","lineage":["https://openalex.org/I63169043"]}],"countries":["BD"],"is_corresponding":true,"raw_author_name":"Swakkhar Shatabda","raw_affiliation_strings":["Department of Computer Science and Engineering, United International University , Dhaka, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, United International University , Dhaka, Bangladesh","institution_ids":["https://openalex.org/I63169043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025400322","display_name":"Alok Sharma","orcid":"https://orcid.org/0000-0002-7668-3501"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I44666525","display_name":"University of the South Pacific","ror":"https://ror.org/008stv805","country_code":"FJ","type":"education","lineage":["https://openalex.org/I44666525"]}],"countries":["AU","FJ","JP"],"is_corresponding":true,"raw_author_name":"Alok Sharma","raw_affiliation_strings":["Institite for Integrated and Intelligent Systems, Griffith University , Brisbane, Queensland, Australia","RIKEN Center for Integrative Medical Sciences , Yokohama, Kanagawa, Japan","School of Engineering and Physics, University of the South Pacific , Private Mail Bag, Laucala Campus, Suva, Fiji"],"affiliations":[{"raw_affiliation_string":"Institite for Integrated and Intelligent Systems, Griffith University , Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences , Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"School of Engineering and Physics, University of the South Pacific , Private Mail Bag, Laucala Campus, Suva, Fiji","institution_ids":["https://openalex.org/I44666525"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068034214","display_name":"Abdollah Dehzangi","orcid":"https://orcid.org/0000-0001-8577-0271"},"institutions":[{"id":"https://openalex.org/I83909951","display_name":"Morgan State University","ror":"https://ror.org/017d8gk22","country_code":"US","type":"education","lineage":["https://openalex.org/I83909951"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Abdollah Dehzangi","raw_affiliation_strings":["Department of Computer Science, Morgan State University , Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Morgan State University , Baltimore, MD, USA","institution_ids":["https://openalex.org/I83909951"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5025400322","https://openalex.org/A5067504579","https://openalex.org/A5068034214"],"corresponding_institution_ids":["https://openalex.org/I11701301","https://openalex.org/I4210150921","https://openalex.org/I44666525","https://openalex.org/I63169043","https://openalex.org/I83909951"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.7853,"has_fulltext":true,"cited_by_count":120,"citation_normalized_percentile":{"value":0.97744507,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"35","issue":"19","first_page":"3831","last_page":"3833"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7975450754165649},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7325331568717957},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6971230506896973},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6697658896446228},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5538743138313293},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4962695240974426},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.45029258728027344},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33724573254585266},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17422029376029968},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1626388430595398}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7975450754165649},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7325331568717957},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6971230506896973},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6697658896446228},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5538743138313293},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4962695240974426},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.45029258728027344},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33724573254585266},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17422029376029968},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1626388430595398},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz165","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/19/3831/48977358/bioinformatics_35_19_3831.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30850831","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30850831","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6761934","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6761934","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/386354","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/386354","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz165","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/19/3831/48977358/bioinformatics_35_19_3831.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.7400000095367432}],"awards":[{"id":"https://openalex.org/G4108904692","display_name":null,"funder_award_id":"UL1GM118973","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2921372942.pdf","grobid_xml":"https://content.openalex.org/works/W2921372942.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1494484168","https://openalex.org/W1988581590","https://openalex.org/W2077450748","https://openalex.org/W2124266758","https://openalex.org/W2160257187","https://openalex.org/W2531205307","https://openalex.org/W2571299862","https://openalex.org/W2587688848","https://openalex.org/W2614102532","https://openalex.org/W2766430481","https://openalex.org/W2780936345","https://openalex.org/W2793168264","https://openalex.org/W2896112739","https://openalex.org/W4236619680","https://openalex.org/W6733365994","https://openalex.org/W6747408139"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W2789551765","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":29},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":4}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
