{"id":"https://openalex.org/W2916333851","doi":"https://doi.org/10.1093/bioinformatics/btz120","title":"pldist: ecological dissimilarities for paired and longitudinal microbiome association analysis","display_name":"pldist: ecological dissimilarities for paired and longitudinal microbiome association analysis","publication_year":2019,"publication_date":"2019-02-18","ids":{"openalex":"https://openalex.org/W2916333851","doi":"https://doi.org/10.1093/bioinformatics/btz120","mag":"2916333851","pmid":"https://pubmed.ncbi.nlm.nih.gov/30863868"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz120","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz120","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6761933","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017913887","display_name":"Anna Plantinga","orcid":"https://orcid.org/0000-0001-6281-7727"},"institutions":[{"id":"https://openalex.org/I22675022","display_name":"Williams College","ror":"https://ror.org/04avkmd49","country_code":"US","type":"education","lineage":["https://openalex.org/I22675022"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anna M Plantinga","raw_affiliation_strings":["Department of Mathematics and Statistics, Williams College , Williamstown, MA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, Williams College , Williamstown, MA, USA","institution_ids":["https://openalex.org/I22675022"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100450167","display_name":"Jun Chen","orcid":"https://orcid.org/0000-0002-1273-5624"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Chen","raw_affiliation_strings":["Department of Health Sciences Research, Division of Biomedical Statistics and Informatics , Mayo Clinic, Rochester, MN, USA","Microbiome Program, Center for Individualized Medicine, Mayo Clinic , Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Division of Biomedical Statistics and Informatics , Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Microbiome Program, Center for Individualized Medicine, Mayo Clinic , Rochester, MN, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025089795","display_name":"Robert R. Jenq","orcid":"https://orcid.org/0000-0002-5434-439X"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert R Jenq","raw_affiliation_strings":["Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center , Houston, TX, USA","Department of Stem Cell Transplantation, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center , Houston, TX, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center , Houston, TX, USA","institution_ids":["https://openalex.org/I1343551460"]},{"raw_affiliation_string":"Department of Stem Cell Transplantation, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center , Houston, TX, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000129649","display_name":"Michael C. Wu","orcid":"https://orcid.org/0000-0002-3357-6570"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael C Wu","raw_affiliation_strings":["Department of Biostatistics and Biomathematics Program, Public Health Sciences Division, Fred Hutchinson Cancer Research Center , Seattle, WA, USA","Department of Biostatistics, University of Washington , Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Biomathematics Program, Public Health Sciences Division, Fred Hutchinson Cancer Research Center , Seattle, WA, USA","institution_ids":["https://openalex.org/I4210089486"]},{"raw_affiliation_string":"Department of Biostatistics, University of Washington , Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000129649","https://openalex.org/A5017913887"],"corresponding_institution_ids":["https://openalex.org/I201448701","https://openalex.org/I22675022","https://openalex.org/I4210089486"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.3112,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.88975366,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"19","first_page":"3567","last_page":"3575"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9505000114440918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unifrac","display_name":"UniFrac","score":0.7108978629112244},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7087180018424988},{"id":"https://openalex.org/keywords/statistical-power","display_name":"Statistical power","score":0.6763997077941895},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5624297261238098},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5420928001403809},{"id":"https://openalex.org/keywords/type-i-and-type-ii-errors","display_name":"Type I and type II errors","score":0.5291215181350708},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5188289880752563},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5106611847877502},{"id":"https://openalex.org/keywords/ordination","display_name":"Ordination","score":0.49575075507164},{"id":"https://openalex.org/keywords/confounding","display_name":"Confounding","score":0.4928431510925293},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.45245087146759033},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3801387548446655},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3707118630409241},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3447081446647644},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3082026541233063},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2354586124420166},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20650437474250793},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15734589099884033},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14101839065551758}],"concepts":[{"id":"https://openalex.org/C151437367","wikidata":"https://www.wikidata.org/wiki/Q7884646","display_name":"UniFrac","level":4,"score":0.7108978629112244},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7087180018424988},{"id":"https://openalex.org/C96608239","wikidata":"https://www.wikidata.org/wiki/Q1199823","display_name":"Statistical power","level":2,"score":0.6763997077941895},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5624297261238098},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5420928001403809},{"id":"https://openalex.org/C40696583","wikidata":"https://www.wikidata.org/wiki/Q989120","display_name":"Type I and type II errors","level":2,"score":0.5291215181350708},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5188289880752563},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5106611847877502},{"id":"https://openalex.org/C175570560","wikidata":"https://www.wikidata.org/wiki/Q2029312","display_name":"Ordination","level":2,"score":0.49575075507164},{"id":"https://openalex.org/C77350462","wikidata":"https://www.wikidata.org/wiki/Q1125472","display_name":"Confounding","level":2,"score":0.4928431510925293},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.45245087146759033},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3801387548446655},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3707118630409241},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3447081446647644},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3082026541233063},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2354586124420166},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20650437474250793},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15734589099884033},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14101839065551758},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz120","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz120","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30863868","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30863868","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6761933","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6761933","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:6761933","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6761933","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1362896280","display_name":null,"funder_award_id":"F31 AI131595","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G6697275907","display_name":null,"funder_award_id":"R01 GM129512","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W88984235","https://openalex.org/W1516274582","https://openalex.org/W1581963595","https://openalex.org/W1592407962","https://openalex.org/W1709638636","https://openalex.org/W1974092500","https://openalex.org/W1999270587","https://openalex.org/W2013624176","https://openalex.org/W2028221693","https://openalex.org/W2032230795","https://openalex.org/W2037878492","https://openalex.org/W2052605694","https://openalex.org/W2056884786","https://openalex.org/W2067045493","https://openalex.org/W2069212958","https://openalex.org/W2071841602","https://openalex.org/W2078112764","https://openalex.org/W2105937617","https://openalex.org/W2112874908","https://openalex.org/W2118629634","https://openalex.org/W2123402141","https://openalex.org/W2145664556","https://openalex.org/W2147618390","https://openalex.org/W2149573313","https://openalex.org/W2151911433","https://openalex.org/W2155860422","https://openalex.org/W2161163382","https://openalex.org/W2162088497","https://openalex.org/W2163401084","https://openalex.org/W2167123129","https://openalex.org/W2170024099","https://openalex.org/W2340700016","https://openalex.org/W2340748026","https://openalex.org/W2379365975","https://openalex.org/W2395461901","https://openalex.org/W2403573949","https://openalex.org/W2501111320","https://openalex.org/W2510675082","https://openalex.org/W2561012278","https://openalex.org/W2587374790","https://openalex.org/W2588997555","https://openalex.org/W2592244930","https://openalex.org/W2609405928","https://openalex.org/W2765314233","https://openalex.org/W2769542288","https://openalex.org/W2773188926","https://openalex.org/W2794676611","https://openalex.org/W2803137361","https://openalex.org/W2892058508","https://openalex.org/W4205366374","https://openalex.org/W4211238251","https://openalex.org/W4230931443","https://openalex.org/W6683921922"],"related_works":["https://openalex.org/W4386773228","https://openalex.org/W3003558595","https://openalex.org/W2752163332","https://openalex.org/W3195675344","https://openalex.org/W2044363112","https://openalex.org/W2130566053","https://openalex.org/W2018863440","https://openalex.org/W2137338763","https://openalex.org/W3113118296","https://openalex.org/W2728179224"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":10},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
