{"id":"https://openalex.org/W2915037678","doi":"https://doi.org/10.1093/bioinformatics/btz059","title":"Predicting the optimal growth temperatures of prokaryotes using only genome derived features","display_name":"Predicting the optimal growth temperatures of prokaryotes using only genome derived features","publication_year":2019,"publication_date":"2019-01-23","ids":{"openalex":"https://openalex.org/W2915037678","doi":"https://doi.org/10.1093/bioinformatics/btz059","mag":"2915037678","pmid":"https://pubmed.ncbi.nlm.nih.gov/30689741"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz059","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/18/3224/30024682/btz059.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/18/3224/30024682/btz059.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058465480","display_name":"David B. Sauer","orcid":"https://orcid.org/0000-0001-9291-4640"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David B Sauer","raw_affiliation_strings":["Department of Cell Biology, and The Helen L. and Martin S. Kimmel Center for Biology and Medicine, Skirball Institute of Biomolecular Medicine, New York University School of Medicine , New York, New York, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, and The Helen L. and Martin S. Kimmel Center for Biology and Medicine, Skirball Institute of Biomolecular Medicine, New York University School of Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056113892","display_name":"Da\u2010Neng Wang","orcid":"https://orcid.org/0000-0002-6496-4699"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Da-Neng Wang","raw_affiliation_strings":["Department of Cell Biology, and The Helen L. and Martin S. Kimmel Center for Biology and Medicine, Skirball Institute of Biomolecular Medicine, New York University School of Medicine , New York, New York, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, and The Helen L. and Martin S. Kimmel Center for Biology and Medicine, Skirball Institute of Biomolecular Medicine, New York University School of Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I57206974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5056113892","https://openalex.org/A5058465480"],"corresponding_institution_ids":["https://openalex.org/I57206974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6626,"has_fulltext":false,"cited_by_count":105,"citation_normalized_percentile":{"value":0.90758301,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"35","issue":"18","first_page":"3224","last_page":"3231"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5979871153831482},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49099257588386536},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41836780309677124},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35857656598091125},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2695332169532776},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11783638596534729}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5979871153831482},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49099257588386536},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41836780309677124},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35857656598091125},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2695332169532776},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11783638596534729}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz059","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/18/3224/30024682/btz059.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30689741","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30689741","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6748728","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6748728","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz059","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/18/3224/30024682/btz059.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G1357728791","display_name":null,"funder_award_id":"W81XH-16-1-0153","funder_id":"https://openalex.org/F4320338488","funder_display_name":"DOD Peer Reviewed Cancer Research Program"},{"id":"https://openalex.org/G1946473482","display_name":null,"funder_award_id":"PF-17-135-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3648219279","display_name":null,"funder_award_id":"R01-DK099023","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3692573616","display_name":null,"funder_award_id":"R01-GM093825","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5783716392","display_name":null,"funder_award_id":"R01-NS108151","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7454019276","display_name":null,"funder_award_id":"R01- GM121994","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320306095","display_name":"American Cancer Society","ror":"https://ror.org/02e463172"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320338488","display_name":"DOD Peer Reviewed Cancer Research Program","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2915037678.pdf","grobid_xml":"https://content.openalex.org/works/W2915037678.grobid-xml"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W1526669805","https://openalex.org/W1541032861","https://openalex.org/W1911391407","https://openalex.org/W1940638915","https://openalex.org/W1967353025","https://openalex.org/W1968423560","https://openalex.org/W1973866508","https://openalex.org/W1983335007","https://openalex.org/W1984158325","https://openalex.org/W1988152731","https://openalex.org/W1990406007","https://openalex.org/W1990513442","https://openalex.org/W1996119816","https://openalex.org/W2006804290","https://openalex.org/W2010889433","https://openalex.org/W2011301426","https://openalex.org/W2013888408","https://openalex.org/W2014857950","https://openalex.org/W2018662755","https://openalex.org/W2019940850","https://openalex.org/W2026343937","https://openalex.org/W2026808634","https://openalex.org/W2031834810","https://openalex.org/W2032061457","https://openalex.org/W2039551017","https://openalex.org/W2041695617","https://openalex.org/W2047444359","https://openalex.org/W2055503200","https://openalex.org/W2062232288","https://openalex.org/W2064341082","https://openalex.org/W2065071812","https://openalex.org/W2072544855","https://openalex.org/W2074383956","https://openalex.org/W2075845492","https://openalex.org/W2076272124","https://openalex.org/W2077483810","https://openalex.org/W2078663788","https://openalex.org/W2087520649","https://openalex.org/W2095267065","https://openalex.org/W2101204196","https://openalex.org/W2101234009","https://openalex.org/W2102619694","https://openalex.org/W2103830151","https://openalex.org/W2106269045","https://openalex.org/W2106665579","https://openalex.org/W2113601822","https://openalex.org/W2114850508","https://openalex.org/W2116787968","https://openalex.org/W2119022200","https://openalex.org/W2122343942","https://openalex.org/W2129589314","https://openalex.org/W2132270281","https://openalex.org/W2133917399","https://openalex.org/W2143485490","https://openalex.org/W2146292423","https://openalex.org/W2150605939","https://openalex.org/W2152093511","https://openalex.org/W2153901638","https://openalex.org/W2155733474","https://openalex.org/W2159954944","https://openalex.org/W2168279898","https://openalex.org/W2177477838","https://openalex.org/W2179575365","https://openalex.org/W2179988958","https://openalex.org/W2393535458","https://openalex.org/W2418655890","https://openalex.org/W2487770199","https://openalex.org/W2561072227","https://openalex.org/W2889019390","https://openalex.org/W2951160681","https://openalex.org/W4211049762","https://openalex.org/W4246954632","https://openalex.org/W6666599228","https://openalex.org/W6669842216","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
