{"id":"https://openalex.org/W2897857928","doi":"https://doi.org/10.1093/bioinformatics/bty868","title":"A global transcriptomic pipeline decoding core network of genes involved in stages leading to acquisition of drug-resistance to cisplatin in osteosarcoma cells","display_name":"A global transcriptomic pipeline decoding core network of genes involved in stages leading to acquisition of drug-resistance to cisplatin in osteosarcoma cells","publication_year":2018,"publication_date":"2018-10-10","ids":{"openalex":"https://openalex.org/W2897857928","doi":"https://doi.org/10.1093/bioinformatics/bty868","mag":"2897857928","pmid":"https://pubmed.ncbi.nlm.nih.gov/30307528"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty868","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty868","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/10/1701/28639984/bty868.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/10/1701/28639984/bty868.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049604021","display_name":"Divya Niveditha","orcid":"https://orcid.org/0000-0003-0548-0042"},"institutions":[{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Divya Niveditha","raw_affiliation_strings":["Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India","institution_ids":["https://openalex.org/I74796645"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103037432","display_name":"Sudeshna Mukherjee","orcid":null},"institutions":[{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sudeshna Mukherjee","raw_affiliation_strings":["Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India","institution_ids":["https://openalex.org/I74796645"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029931153","display_name":"Syamantak Majumder","orcid":"https://orcid.org/0000-0001-8957-9810"},"institutions":[{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Syamantak Majumder","raw_affiliation_strings":["Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India","institution_ids":["https://openalex.org/I74796645"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013979692","display_name":"Rajdeep Chowdhury","orcid":"https://orcid.org/0000-0002-6041-0613"},"institutions":[{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Rajdeep Chowdhury","raw_affiliation_strings":["Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India","institution_ids":["https://openalex.org/I74796645"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042267427","display_name":"Shibasish Chowdhury","orcid":"https://orcid.org/0000-0001-9290-3802"},"institutions":[{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Shibasish Chowdhury","raw_affiliation_strings":["Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India","institution_ids":["https://openalex.org/I74796645"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5013979692","https://openalex.org/A5042267427"],"corresponding_institution_ids":["https://openalex.org/I74796645"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7354,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.70528687,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"35","issue":"10","first_page":"1701","last_page":"1711"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.8303624391555786},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6056637763977051},{"id":"https://openalex.org/keywords/drug-resistance","display_name":"Drug resistance","score":0.581963062286377},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5610809326171875},{"id":"https://openalex.org/keywords/osteosarcoma","display_name":"Osteosarcoma","score":0.5540301203727722},{"id":"https://openalex.org/keywords/cisplatin","display_name":"Cisplatin","score":0.552386462688446},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4669210910797119},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.3976101279258728},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3950856328010559},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33653268218040466},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2850690484046936},{"id":"https://openalex.org/keywords/chemotherapy","display_name":"Chemotherapy","score":0.2377701699733734},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21041280031204224}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.8303624391555786},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6056637763977051},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.581963062286377},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5610809326171875},{"id":"https://openalex.org/C2777760704","wikidata":"https://www.wikidata.org/wiki/Q549534","display_name":"Osteosarcoma","level":2,"score":0.5540301203727722},{"id":"https://openalex.org/C2778239845","wikidata":"https://www.wikidata.org/wiki/Q412415","display_name":"Cisplatin","level":3,"score":0.552386462688446},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4669210910797119},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3976101279258728},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3950856328010559},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33653268218040466},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2850690484046936},{"id":"https://openalex.org/C2776694085","wikidata":"https://www.wikidata.org/wiki/Q974135","display_name":"Chemotherapy","level":2,"score":0.2377701699733734},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21041280031204224},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001859","descriptor_name":"Bone Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001859","descriptor_name":"Bone Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001859","descriptor_name":"Bone Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002945","descriptor_name":"Cisplatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002945","descriptor_name":"Cisplatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002945","descriptor_name":"Cisplatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012516","descriptor_name":"Osteosarcoma","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012516","descriptor_name":"Osteosarcoma","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012516","descriptor_name":"Osteosarcoma","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty868","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty868","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/10/1701/28639984/bty868.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30307528","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30307528","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty868","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty868","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/10/1701/28639984/bty868.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7300000190734863,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G144252550","display_name":null,"funder_award_id":"SB/FT/LS-233/2012","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"},{"id":"https://openalex.org/G8488811752","display_name":null,"funder_award_id":"BT/PR/8799/MED/30/1067/2013","funder_id":"https://openalex.org/F4320326656","funder_display_name":"Department of Biotechnology, Government of West Bengal"}],"funders":[{"id":"https://openalex.org/F4320320719","display_name":"Department of Science and Technology, Ministry of Science and Technology, India","ror":"https://ror.org/0101xrq71"},{"id":"https://openalex.org/F4320326656","display_name":"Department of Biotechnology, Government of West Bengal","ror":null},{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2897857928.pdf","grobid_xml":"https://content.openalex.org/works/W2897857928.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1565491355","https://openalex.org/W1974969947","https://openalex.org/W1976033223","https://openalex.org/W1981082529","https://openalex.org/W1982499214","https://openalex.org/W1984621921","https://openalex.org/W1995478441","https://openalex.org/W1997886758","https://openalex.org/W1997893076","https://openalex.org/W2000476522","https://openalex.org/W2012319099","https://openalex.org/W2012766110","https://openalex.org/W2018033148","https://openalex.org/W2019723293","https://openalex.org/W2020541351","https://openalex.org/W2023964913","https://openalex.org/W2033455310","https://openalex.org/W2045551016","https://openalex.org/W2045825103","https://openalex.org/W2046856549","https://openalex.org/W2047480148","https://openalex.org/W2052474826","https://openalex.org/W2054022416","https://openalex.org/W2054239953","https://openalex.org/W2062295650","https://openalex.org/W2065751883","https://openalex.org/W2067137531","https://openalex.org/W2067256262","https://openalex.org/W2078950638","https://openalex.org/W2081673273","https://openalex.org/W2084472730","https://openalex.org/W2086199950","https://openalex.org/W2087861588","https://openalex.org/W2098791934","https://openalex.org/W2104982591","https://openalex.org/W2106391833","https://openalex.org/W2107277218","https://openalex.org/W2127129900","https://openalex.org/W2131487381","https://openalex.org/W2132089894","https://openalex.org/W2133201200","https://openalex.org/W2135254067","https://openalex.org/W2159515687","https://openalex.org/W2179438025","https://openalex.org/W2200023299","https://openalex.org/W2239096611","https://openalex.org/W2259572413","https://openalex.org/W2275679174","https://openalex.org/W2277704060","https://openalex.org/W2345459181","https://openalex.org/W2404920363","https://openalex.org/W2483610393","https://openalex.org/W2547042317","https://openalex.org/W2588873696","https://openalex.org/W2623719044","https://openalex.org/W2734329550","https://openalex.org/W2745218111","https://openalex.org/W2765217312","https://openalex.org/W2769473760","https://openalex.org/W2801896245","https://openalex.org/W4243541841","https://openalex.org/W6667569961"],"related_works":["https://openalex.org/W2320346276","https://openalex.org/W4241436983","https://openalex.org/W3178656640","https://openalex.org/W2356699866","https://openalex.org/W4306641919","https://openalex.org/W2768492030","https://openalex.org/W2620289816","https://openalex.org/W2388705147","https://openalex.org/W2375068014","https://openalex.org/W3155641129"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
