{"id":"https://openalex.org/W2896281462","doi":"https://doi.org/10.1093/bioinformatics/bty846","title":"A new method bridging graph theory and residue co-evolutionary networks for specificity determinant positions detection","display_name":"A new method bridging graph theory and residue co-evolutionary networks for specificity determinant positions detection","publication_year":2018,"publication_date":"2018-10-04","ids":{"openalex":"https://openalex.org/W2896281462","doi":"https://doi.org/10.1093/bioinformatics/bty846","mag":"2896281462","pmid":"https://pubmed.ncbi.nlm.nih.gov/30295749"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty846","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty846","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078826382","display_name":"Neli Fonseca","orcid":"https://orcid.org/0000-0001-6466-8083"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"N\u00e9li Jos\u00e9 da Fonseca","raw_affiliation_strings":["Departmento de Bioqu\u00edmica e Imunologia, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte \u2013 MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Departmento de Bioqu\u00edmica e Imunologia, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte \u2013 MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057489258","display_name":"Marcelo Querino Lima Afonso","orcid":"https://orcid.org/0000-0002-9966-8187"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marcelo Querino Lima Afonso","raw_affiliation_strings":["Departmento de Bioqu\u00edmica e Imunologia, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte \u2013 MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Departmento de Bioqu\u00edmica e Imunologia, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte \u2013 MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053480014","display_name":"Lucas Carrijo de Oliveira","orcid":"https://orcid.org/0000-0003-1855-0871"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Lucas Carrijo de Oliveira","raw_affiliation_strings":["Departmento de Bioqu\u00edmica e Imunologia, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte \u2013 MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Departmento de Bioqu\u00edmica e Imunologia, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte \u2013 MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006296542","display_name":"Lucas Bleicher","orcid":"https://orcid.org/0000-0001-7121-4952"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Lucas Bleicher","raw_affiliation_strings":["Departmento de Bioqu\u00edmica e Imunologia, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte \u2013 MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Departmento de Bioqu\u00edmica e Imunologia, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte \u2013 MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006296542"],"corresponding_institution_ids":["https://openalex.org/I110200422"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3677,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.6048348,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"35","issue":"9","first_page":"1478","last_page":"1485"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9527999758720398,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.647996187210083},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6329816579818726},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.6106883883476257},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.5680285692214966},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5631590485572815},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5388581156730652},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5036928057670593},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4755805730819702},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.44790008664131165},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44553542137145996},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.41347044706344604},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3825479745864868},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3101505637168884},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19551292061805725},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18890249729156494},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1661631166934967},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16303598880767822},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10713130235671997}],"concepts":[{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.647996187210083},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6329816579818726},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.6106883883476257},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.5680285692214966},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5631590485572815},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5388581156730652},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5036928057670593},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4755805730819702},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.44790008664131165},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44553542137145996},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.41347044706344604},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3825479745864868},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3101505637168884},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19551292061805725},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18890249729156494},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1661631166934967},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16303598880767822},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10713130235671997},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty846","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty846","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30295749","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30295749","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1556223335","display_name":null,"funder_award_id":"457851/2014-7","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G467676083","display_name":null,"funder_award_id":"051-2013","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322980","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","ror":"https://ror.org/00nc55f03"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":83,"referenced_works":["https://openalex.org/W78253720","https://openalex.org/W155239904","https://openalex.org/W1530641120","https://openalex.org/W1534406401","https://openalex.org/W1546022138","https://openalex.org/W1546341583","https://openalex.org/W1551152196","https://openalex.org/W1566807187","https://openalex.org/W1599904921","https://openalex.org/W1691583558","https://openalex.org/W1836431516","https://openalex.org/W1897051525","https://openalex.org/W1914294109","https://openalex.org/W1965469766","https://openalex.org/W1965582988","https://openalex.org/W1968217253","https://openalex.org/W1970913835","https://openalex.org/W1971174646","https://openalex.org/W1971421925","https://openalex.org/W1975670646","https://openalex.org/W1981956283","https://openalex.org/W1991209494","https://openalex.org/W1993039539","https://openalex.org/W2020106188","https://openalex.org/W2023000972","https://openalex.org/W2026833480","https://openalex.org/W2031194966","https://openalex.org/W2033339460","https://openalex.org/W2038793346","https://openalex.org/W2043040588","https://openalex.org/W2044728500","https://openalex.org/W2049631297","https://openalex.org/W2051185826","https://openalex.org/W2052816778","https://openalex.org/W2062533676","https://openalex.org/W2067584879","https://openalex.org/W2082396928","https://openalex.org/W2085099772","https://openalex.org/W2087459024","https://openalex.org/W2089335658","https://openalex.org/W2092006899","https://openalex.org/W2092735663","https://openalex.org/W2094967199","https://openalex.org/W2097278341","https://openalex.org/W2097892623","https://openalex.org/W2100009368","https://openalex.org/W2102904949","https://openalex.org/W2110042475","https://openalex.org/W2111010158","https://openalex.org/W2112090702","https://openalex.org/W2115398984","https://openalex.org/W2123402141","https://openalex.org/W2128732528","https://openalex.org/W2134874967","https://openalex.org/W2139468798","https://openalex.org/W2140563512","https://openalex.org/W2157861841","https://openalex.org/W2159056360","https://openalex.org/W2164831247","https://openalex.org/W2167321512","https://openalex.org/W2185024408","https://openalex.org/W2194756172","https://openalex.org/W2224056471","https://openalex.org/W2225104588","https://openalex.org/W2346012195","https://openalex.org/W2512714520","https://openalex.org/W2592074636","https://openalex.org/W2611184689","https://openalex.org/W2726188591","https://openalex.org/W2745805188","https://openalex.org/W2949122710","https://openalex.org/W2951271819","https://openalex.org/W3024374631","https://openalex.org/W3101409477","https://openalex.org/W3126033509","https://openalex.org/W4237342718","https://openalex.org/W6632879856","https://openalex.org/W6632957187","https://openalex.org/W6635588883","https://openalex.org/W6638794943","https://openalex.org/W6656354694","https://openalex.org/W6673464931","https://openalex.org/W6680779118"],"related_works":["https://openalex.org/W2009133913","https://openalex.org/W2275032899","https://openalex.org/W2155320525","https://openalex.org/W2028741573","https://openalex.org/W2015399150","https://openalex.org/W1983792126","https://openalex.org/W1992358035","https://openalex.org/W4200486190","https://openalex.org/W2574250337","https://openalex.org/W2029358573"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
