{"id":"https://openalex.org/W2883298447","doi":"https://doi.org/10.1093/bioinformatics/bty660","title":"iSwathX: an interactive web-based application for extension of DIA peptide reference libraries","display_name":"iSwathX: an interactive web-based application for extension of DIA peptide reference libraries","publication_year":2018,"publication_date":"2018-07-20","ids":{"openalex":"https://openalex.org/W2883298447","doi":"https://doi.org/10.1093/bioinformatics/bty660","mag":"2883298447","pmid":"https://pubmed.ncbi.nlm.nih.gov/30052774"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty660","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty660","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/3/538/27700294/bty660.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/3/538/27700294/bty660.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040609768","display_name":"Zainab Noor","orcid":"https://orcid.org/0000-0002-9314-5705"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Zainab Noor","raw_affiliation_strings":["Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074585985","display_name":"Jemma Wu","orcid":"https://orcid.org/0000-0001-8578-8455"},"institutions":[{"id":"https://openalex.org/I4210154382","display_name":"Australian Genome Research Facility","ror":"https://ror.org/053v53919","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210154382"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jemma X Wu","raw_affiliation_strings":["Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I4210154382","https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073207811","display_name":"Dana Pascovici","orcid":"https://orcid.org/0000-0002-3266-4851"},"institutions":[{"id":"https://openalex.org/I4210154382","display_name":"Australian Genome Research Facility","ror":"https://ror.org/053v53919","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210154382"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dana Pascovici","raw_affiliation_strings":["Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I4210154382","https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091778634","display_name":"Abidali Mohamedali","orcid":"https://orcid.org/0000-0001-5627-4105"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Abidali Mohamedali","raw_affiliation_strings":["Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069735960","display_name":"Mark P. Molloy","orcid":"https://orcid.org/0000-0003-4679-5868"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]},{"id":"https://openalex.org/I4210154382","display_name":"Australian Genome Research Facility","ror":"https://ror.org/053v53919","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210154382"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mark P Molloy","raw_affiliation_strings":["Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW, Australia","Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I4210154382","https://openalex.org/I99043593"]},{"raw_affiliation_string":"Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057615730","display_name":"Mark S. Baker","orcid":"https://orcid.org/0000-0001-5858-4035"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mark S Baker","raw_affiliation_strings":["Department of Biomedical Sciences, Macquarie University, Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, Macquarie University, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083278600","display_name":"Shoba Ranganathan","orcid":"https://orcid.org/0000-0002-8290-813X"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Shoba Ranganathan","raw_affiliation_strings":["Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I99043593"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5083278600"],"corresponding_institution_ids":["https://openalex.org/I99043593"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3339,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.77070143,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"35","issue":"3","first_page":"538","last_page":"539"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9659000039100647,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.7965114116668701},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.74355149269104},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6021794676780701},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5406131744384766},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.44252216815948486},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.20650339126586914},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1873399317264557}],"concepts":[{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.7965114116668701},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.74355149269104},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6021794676780701},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5406131744384766},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.44252216815948486},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.20650339126586914},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1873399317264557}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019151","descriptor_name":"Peptide Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019151","descriptor_name":"Peptide Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019151","descriptor_name":"Peptide Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty660","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty660","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/3/538/27700294/bty660.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30052774","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30052774","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty660","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty660","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/3/538/27700294/bty660.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2883298447.pdf","grobid_xml":"https://content.openalex.org/works/W2883298447.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1981098361","https://openalex.org/W2346255325","https://openalex.org/W2504374598","https://openalex.org/W2529750106","https://openalex.org/W2582743722","https://openalex.org/W2616543131","https://openalex.org/W2745376284"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W255623911","https://openalex.org/W291827334","https://openalex.org/W1601617767","https://openalex.org/W2766007331","https://openalex.org/W2027911892","https://openalex.org/W2520355961","https://openalex.org/W1606752009","https://openalex.org/W4245697572","https://openalex.org/W277486614"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}