{"id":"https://openalex.org/W2784883284","doi":"https://doi.org/10.1093/bioinformatics/bty494","title":"Deep convolutional networks for quality assessment of protein folds","display_name":"Deep convolutional networks for quality assessment of protein folds","publication_year":2018,"publication_date":"2018-06-15","ids":{"openalex":"https://openalex.org/W2784883284","doi":"https://doi.org/10.1093/bioinformatics/bty494","mag":"2784883284","pmid":"https://pubmed.ncbi.nlm.nih.gov/29931128"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/23/4046/26676600/bty494.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/23/4046/26676600/bty494.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070288864","display_name":"Georgy Derevyanko","orcid":"https://orcid.org/0000-0002-8462-2581"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Georgy Derevyanko","raw_affiliation_strings":["Department of Chemistry and Biochemistry and Centre for Research in Molecular Modeling (CERMM), Concordia University, Montr\u00e9al, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry and Centre for Research in Molecular Modeling (CERMM), Concordia University, Montr\u00e9al, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009307435","display_name":"Sergei Grudinin","orcid":"https://orcid.org/0000-0002-1903-7220"},"institutions":[{"id":"https://openalex.org/I899635006","display_name":"Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/02rx3b187","country_code":"FR","type":"education","lineage":["https://openalex.org/I899635006"]},{"id":"https://openalex.org/I4210149092","display_name":"Laboratoire Jean Kuntzmann","ror":"https://ror.org/04ett5b41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210149092","https://openalex.org/I899635006","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I106785703","display_name":"Institut polytechnique de Grenoble","ror":"https://ror.org/05sbt2524","country_code":"FR","type":"education","lineage":["https://openalex.org/I106785703","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sergei Grudinin","raw_affiliation_strings":["Inria, Universit\u00e9 Grenoble Alpes, CNRS, Grenoble INP, LJK, Grenoble, France"],"affiliations":[{"raw_affiliation_string":"Inria, Universit\u00e9 Grenoble Alpes, CNRS, Grenoble INP, LJK, Grenoble, France","institution_ids":["https://openalex.org/I899635006","https://openalex.org/I106785703","https://openalex.org/I4210149092","https://openalex.org/I4210101348","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086198262","display_name":"Yoshua Bengio","orcid":"https://orcid.org/0000-0002-9322-3515"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yoshua Bengio","raw_affiliation_strings":["Department of Computer Science and Operations Research, Universit\u00e9 de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Operations Research, Universit\u00e9 de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000857231","display_name":"Guillaume Lamoureux","orcid":"https://orcid.org/0000-0001-7656-0176"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Guillaume Lamoureux","raw_affiliation_strings":["Department of Chemistry and Biochemistry and Centre for Research in Molecular Modeling (CERMM), Concordia University, Montr\u00e9al, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry and Centre for Research in Molecular Modeling (CERMM), Concordia University, Montr\u00e9al, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I60158472"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5070288864"],"corresponding_institution_ids":["https://openalex.org/I60158472"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.0276,"has_fulltext":false,"cited_by_count":112,"citation_normalized_percentile":{"value":0.97266015,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"34","issue":"23","first_page":"4046","last_page":"4053"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6856483817100525},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6514451503753662},{"id":"https://openalex.org/keywords/quality-assessment","display_name":"Quality assessment","score":0.5736709237098694},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5133256316184998},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48440462350845337},{"id":"https://openalex.org/keywords/reliability-engineering","display_name":"Reliability engineering","score":0.12290605902671814},{"id":"https://openalex.org/keywords/evaluation-methods","display_name":"Evaluation methods","score":0.11102050542831421},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07087844610214233}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6856483817100525},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6514451503753662},{"id":"https://openalex.org/C3020001037","wikidata":"https://www.wikidata.org/wiki/Q836575","display_name":"Quality assessment","level":3,"score":0.5736709237098694},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5133256316184998},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48440462350845337},{"id":"https://openalex.org/C200601418","wikidata":"https://www.wikidata.org/wiki/Q2193887","display_name":"Reliability engineering","level":1,"score":0.12290605902671814},{"id":"https://openalex.org/C3018395757","wikidata":"https://www.wikidata.org/wiki/Q1379672","display_name":"Evaluation methods","level":2,"score":0.11102050542831421},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07087844610214233},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/23/4046/26676600/bty494.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29931128","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29931128","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1801.06252","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1801.06252","pdf_url":"https://arxiv.org/pdf/1801.06252","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:HAL:hal-01702857v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-01702857","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2018, 34 (23), pp.4046-4053. &#x27E8;10.1093/bioinformatics/bty494&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/23/4046/26676600/bty494.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6839630253","display_name":null,"funder_award_id":"RGPIN 355789","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8995802614","display_name":null,"funder_award_id":"RGPIN 1016552","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320309949","display_name":"Canadian Institute for Advanced Research","ror":"https://ror.org/01sdtdd95"},{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2784883284.pdf","grobid_xml":"https://content.openalex.org/works/W2784883284.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W151424416","https://openalex.org/W255996521","https://openalex.org/W1019830208","https://openalex.org/W1514027499","https://openalex.org/W1522301498","https://openalex.org/W1661620966","https://openalex.org/W1722029454","https://openalex.org/W1836465849","https://openalex.org/W1965827393","https://openalex.org/W1982959183","https://openalex.org/W1999613945","https://openalex.org/W2002287050","https://openalex.org/W2014050554","https://openalex.org/W2017285544","https://openalex.org/W2021534482","https://openalex.org/W2028629022","https://openalex.org/W2047221353","https://openalex.org/W2054394841","https://openalex.org/W2055043387","https://openalex.org/W2088338354","https://openalex.org/W2100495367","https://openalex.org/W2105527266","https://openalex.org/W2106648157","https://openalex.org/W2109801072","https://openalex.org/W2117451312","https://openalex.org/W2118387386","https://openalex.org/W2120796076","https://openalex.org/W2123085274","https://openalex.org/W2125677968","https://openalex.org/W2134967712","https://openalex.org/W2136922672","https://openalex.org/W2140673705","https://openalex.org/W2140790266","https://openalex.org/W2147800946","https://openalex.org/W2161151688","https://openalex.org/W2163605009","https://openalex.org/W2168321064","https://openalex.org/W2173669824","https://openalex.org/W2198606573","https://openalex.org/W2201713963","https://openalex.org/W2214665483","https://openalex.org/W2224056471","https://openalex.org/W2287165934","https://openalex.org/W2514534732","https://openalex.org/W2517233028","https://openalex.org/W2527189750","https://openalex.org/W2534288757","https://openalex.org/W2541404351","https://openalex.org/W2576915720","https://openalex.org/W2583907533","https://openalex.org/W2594725344","https://openalex.org/W2617750324","https://openalex.org/W2618626073","https://openalex.org/W2625768267","https://openalex.org/W2726670313","https://openalex.org/W2919115771","https://openalex.org/W2949117887","https://openalex.org/W2951320766","https://openalex.org/W2962858109","https://openalex.org/W2963346784","https://openalex.org/W2963749936","https://openalex.org/W3102564565","https://openalex.org/W3104705366","https://openalex.org/W4241676240","https://openalex.org/W4300537282","https://openalex.org/W4300802462"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W1963988314","https://openalex.org/W1924500548"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":6}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
