{"id":"https://openalex.org/W2952923426","doi":"https://doi.org/10.1093/bioinformatics/bty491","title":"Reverse-engineering flow-cytometry gating strategies for phenotypic labelling and high-performance cell sorting","display_name":"Reverse-engineering flow-cytometry gating strategies for phenotypic labelling and high-performance cell sorting","publication_year":2018,"publication_date":"2018-06-18","ids":{"openalex":"https://openalex.org/W2952923426","doi":"https://doi.org/10.1093/bioinformatics/bty491","mag":"2952923426","pmid":"https://pubmed.ncbi.nlm.nih.gov/29931307"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/2/301/27497051/bty491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/2/301/27497051/bty491.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030853966","display_name":"\u00c9tienne Becht","orcid":"https://orcid.org/0000-0003-1859-9202"},"institutions":[{"id":"https://openalex.org/I2800824516","display_name":"Singapore Immunology Network","ror":"https://ror.org/03vmmgg57","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2800824516","https://openalex.org/I2801752549"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Etienne Becht","raw_affiliation_strings":["Singapore Immunology Network, Agency for Science Technology and Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Singapore Immunology Network, Agency for Science Technology and Research, Singapore","institution_ids":["https://openalex.org/I2800824516","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003064759","display_name":"Yannick Simoni","orcid":"https://orcid.org/0000-0002-9086-3680"},"institutions":[{"id":"https://openalex.org/I2800824516","display_name":"Singapore Immunology Network","ror":"https://ror.org/03vmmgg57","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2800824516","https://openalex.org/I2801752549"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yannick Simoni","raw_affiliation_strings":["Singapore Immunology Network, Agency for Science Technology and Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Singapore Immunology Network, Agency for Science Technology and Research, Singapore","institution_ids":["https://openalex.org/I2800824516","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037616829","display_name":"Elaine Coustan\u2010Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Elaine Coustan-Smith","raw_affiliation_strings":["Department of Paediatrics, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department of Paediatrics, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080040337","display_name":"Maximilien Evrard","orcid":"https://orcid.org/0000-0002-2105-1160"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I2800824516","display_name":"Singapore Immunology Network","ror":"https://ror.org/03vmmgg57","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2800824516","https://openalex.org/I2801752549"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Maximilien Evrard","raw_affiliation_strings":["Singapore Immunology Network, Agency for Science Technology and Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Singapore Immunology Network, Agency for Science Technology and Research, Singapore","institution_ids":["https://openalex.org/I2800824516","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040256312","display_name":"Yang Cheng","orcid":"https://orcid.org/0000-0002-5906-7694"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I2800824516","display_name":"Singapore Immunology Network","ror":"https://ror.org/03vmmgg57","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2800824516","https://openalex.org/I2801752549"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yang Cheng","raw_affiliation_strings":["Singapore Immunology Network, Agency for Science Technology and Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Singapore Immunology Network, Agency for Science Technology and Research, Singapore","institution_ids":["https://openalex.org/I2800824516","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042233913","display_name":"Lai Guan Ng","orcid":"https://orcid.org/0000-0003-1905-3586"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I2800824516","display_name":"Singapore Immunology Network","ror":"https://ror.org/03vmmgg57","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2800824516","https://openalex.org/I2801752549"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Lai Guan Ng","raw_affiliation_strings":["Singapore Immunology Network, Agency for Science Technology and Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Singapore Immunology Network, Agency for Science Technology and Research, Singapore","institution_ids":["https://openalex.org/I2800824516","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065331155","display_name":"Dario Campana","orcid":"https://orcid.org/0000-0001-9980-3230"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Dario Campana","raw_affiliation_strings":["Department of Paediatrics, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department of Paediatrics, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060666271","display_name":"Evan W. Newell","orcid":"https://orcid.org/0000-0002-2889-243X"},"institutions":[{"id":"https://openalex.org/I2800824516","display_name":"Singapore Immunology Network","ror":"https://ror.org/03vmmgg57","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2800824516","https://openalex.org/I2801752549"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Evan W Newell","raw_affiliation_strings":["Singapore Immunology Network, Agency for Science Technology and Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Singapore Immunology Network, Agency for Science Technology and Research, Singapore","institution_ids":["https://openalex.org/I2800824516","https://openalex.org/I115228651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5060666271"],"corresponding_institution_ids":["https://openalex.org/I115228651","https://openalex.org/I2800824516"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5858,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.84044566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"35","issue":"2","first_page":"301","last_page":"308"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11692","display_name":"Noise Effects and Management","score":0.9458000063896179,"subfield":{"id":"https://openalex.org/subfields/3616","display_name":"Speech and Hearing"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11119","display_name":"Urban Stormwater Management Solutions","score":0.9409999847412109,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gating","display_name":"Gating","score":0.8389551639556885},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.716580331325531},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6197322607040405},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6157563924789429},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.548588216304779},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5457786917686462},{"id":"https://openalex.org/keywords/mass-cytometry","display_name":"Mass cytometry","score":0.49428367614746094},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42741772532463074},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3539162874221802},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33016741275787354},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.22885525226593018},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.2181832194328308},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20386120676994324}],"concepts":[{"id":"https://openalex.org/C194544171","wikidata":"https://www.wikidata.org/wiki/Q21105679","display_name":"Gating","level":2,"score":0.8389551639556885},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.716580331325531},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6197322607040405},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6157563924789429},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.548588216304779},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5457786917686462},{"id":"https://openalex.org/C2778015335","wikidata":"https://www.wikidata.org/wiki/Q17051163","display_name":"Mass cytometry","level":4,"score":0.49428367614746094},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42741772532463074},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3539162874221802},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33016741275787354},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.22885525226593018},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.2181832194328308},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20386120676994324},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C42407357","wikidata":"https://www.wikidata.org/wiki/Q521","display_name":"Physiology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002469","descriptor_name":"Cell Separation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002469","descriptor_name":"Cell Separation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002469","descriptor_name":"Cell Separation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008214","descriptor_name":"Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D008214","descriptor_name":"Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D008214","descriptor_name":"Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/2/301/27497051/bty491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29931307","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29931307","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/2/301/27497051/bty491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952923426.pdf","grobid_xml":"https://content.openalex.org/works/W2952923426.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1607536760","https://openalex.org/W1607921872","https://openalex.org/W1608909099","https://openalex.org/W1631320694","https://openalex.org/W1845511091","https://openalex.org/W1875842236","https://openalex.org/W1974294304","https://openalex.org/W2033560619","https://openalex.org/W2064346298","https://openalex.org/W2112493011","https://openalex.org/W2171074980","https://openalex.org/W2187089797","https://openalex.org/W2205173232","https://openalex.org/W2358421111","https://openalex.org/W2461073387","https://openalex.org/W2526724898","https://openalex.org/W2562858382","https://openalex.org/W2580658028","https://openalex.org/W2612538354","https://openalex.org/W2761095749","https://openalex.org/W2789844817","https://openalex.org/W2950814274","https://openalex.org/W2951566836"],"related_works":["https://openalex.org/W2766989726","https://openalex.org/W2952723901","https://openalex.org/W4386301123","https://openalex.org/W2758463337","https://openalex.org/W2053129129","https://openalex.org/W4251194061","https://openalex.org/W2738798767","https://openalex.org/W4200474388","https://openalex.org/W2031449089","https://openalex.org/W2342330592"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-04T09:10:02.777135","created_date":"2025-10-10T00:00:00"}
