{"id":"https://openalex.org/W2808950571","doi":"https://doi.org/10.1093/bioinformatics/bty481","title":"Accurate prediction of protein contact maps by coupling residual two-dimensional bidirectional long short-term memory with convolutional neural networks","display_name":"Accurate prediction of protein contact maps by coupling residual two-dimensional bidirectional long short-term memory with convolutional neural networks","publication_year":2018,"publication_date":"2018-06-13","ids":{"openalex":"https://openalex.org/W2808950571","doi":"https://doi.org/10.1093/bioinformatics/bty481","mag":"2808950571","pmid":"https://pubmed.ncbi.nlm.nih.gov/29931279"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty481","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty481","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066694098","display_name":"Jack Hanson","orcid":"https://orcid.org/0000-0001-6956-6748"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jack Hanson","raw_affiliation_strings":["Signal Processing Laboratory, Griffith University, Brisbane, Australia"],"affiliations":[{"raw_affiliation_string":"Signal Processing Laboratory, Griffith University, Brisbane, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046089538","display_name":"Kuldip K. Paliwal","orcid":"https://orcid.org/0000-0002-3553-3662"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kuldip Paliwal","raw_affiliation_strings":["Signal Processing Laboratory, Griffith University, Brisbane, Australia"],"affiliations":[{"raw_affiliation_string":"Signal Processing Laboratory, Griffith University, Brisbane, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048999222","display_name":"Thomas Litfin","orcid":"https://orcid.org/0000-0002-4863-3865"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Thomas Litfin","raw_affiliation_strings":["Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, Australia"],"affiliations":[{"raw_affiliation_string":"Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023539493","display_name":"Yuedong Yang","orcid":"https://orcid.org/0000-0002-6782-2813"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Yuedong Yang","raw_affiliation_strings":["Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, Australia","School of Data and Computer Science, Sun-Yat Sen University, Guangzhou, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"School of Data and Computer Science, Sun-Yat Sen University, Guangzhou, Guangdong, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032724151","display_name":"Yaoqi Zhou","orcid":"https://orcid.org/0000-0002-9958-5699"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Yaoqi Zhou","raw_affiliation_strings":["Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, Australia"],"affiliations":[{"raw_affiliation_string":"Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, Australia","institution_ids":["https://openalex.org/I11701301"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5032724151","https://openalex.org/A5066694098"],"corresponding_institution_ids":["https://openalex.org/I11701301"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":11.077,"has_fulltext":false,"cited_by_count":203,"citation_normalized_percentile":{"value":0.9906367,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"34","issue":"23","first_page":"4039","last_page":"4045"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/residual","display_name":"Residual","score":0.8213804364204407},{"id":"https://openalex.org/keywords/stacking","display_name":"Stacking","score":0.696932315826416},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.691508948802948},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6869033575057983},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5512795448303223},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4794405996799469},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.4740274250507355},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4651082158088684},{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.4597596824169159},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4407908320426941},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.40173113346099854},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.287781298160553},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1085481345653534},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09080561995506287}],"concepts":[{"id":"https://openalex.org/C155512373","wikidata":"https://www.wikidata.org/wiki/Q287450","display_name":"Residual","level":2,"score":0.8213804364204407},{"id":"https://openalex.org/C33347731","wikidata":"https://www.wikidata.org/wiki/Q285210","display_name":"Stacking","level":2,"score":0.696932315826416},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.691508948802948},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6869033575057983},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5512795448303223},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4794405996799469},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.4740274250507355},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4651082158088684},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.4597596824169159},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4407908320426941},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.40173113346099854},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.287781298160553},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1085481345653534},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09080561995506287},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty481","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty481","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29931279","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29931279","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:b754bba","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/383639","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/383639","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1065191731","display_name":null,"funder_award_id":"1121629","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G1114770080","display_name":null,"funder_award_id":"DP180102060","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G1619931070","display_name":null,"funder_award_id":"U1611261","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5108781970","display_name":null,"funder_award_id":"61772566","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320315813","display_name":"Queensland Cyber Infrastructure Foundation","ror":"https://ror.org/03sd43014"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":71,"referenced_works":["https://openalex.org/W757829720","https://openalex.org/W1522301498","https://openalex.org/W1540530720","https://openalex.org/W1664573881","https://openalex.org/W1685006559","https://openalex.org/W1969067576","https://openalex.org/W1975017420","https://openalex.org/W2006796203","https://openalex.org/W2008545402","https://openalex.org/W2013425283","https://openalex.org/W2033354942","https://openalex.org/W2045088722","https://openalex.org/W2051210555","https://openalex.org/W2060107523","https://openalex.org/W2064675550","https://openalex.org/W2095705004","https://openalex.org/W2108101947","https://openalex.org/W2109610280","https://openalex.org/W2114340287","https://openalex.org/W2119843684","https://openalex.org/W2131774270","https://openalex.org/W2135293965","https://openalex.org/W2136799255","https://openalex.org/W2136922672","https://openalex.org/W2137566700","https://openalex.org/W2137965757","https://openalex.org/W2147209844","https://openalex.org/W2147800946","https://openalex.org/W2148603752","https://openalex.org/W2157825442","https://openalex.org/W2158698691","https://openalex.org/W2158714788","https://openalex.org/W2164583490","https://openalex.org/W2166701319","https://openalex.org/W2171641243","https://openalex.org/W2176412452","https://openalex.org/W2271840356","https://openalex.org/W2311607323","https://openalex.org/W2333216469","https://openalex.org/W2336829316","https://openalex.org/W2511640085","https://openalex.org/W2547388037","https://openalex.org/W2557595285","https://openalex.org/W2566370974","https://openalex.org/W2572403989","https://openalex.org/W2574496196","https://openalex.org/W2600704321","https://openalex.org/W2607268717","https://openalex.org/W2610313513","https://openalex.org/W2765742208","https://openalex.org/W2766736793","https://openalex.org/W2949867299","https://openalex.org/W2950334474","https://openalex.org/W2950956209","https://openalex.org/W2951621517","https://openalex.org/W2963285578","https://openalex.org/W2963917928","https://openalex.org/W3099395032","https://openalex.org/W4234552385","https://openalex.org/W4285719527","https://openalex.org/W6631190155","https://openalex.org/W6637116368","https://openalex.org/W6637625270","https://openalex.org/W6674330103","https://openalex.org/W6682610290","https://openalex.org/W6685562342","https://openalex.org/W6694517276","https://openalex.org/W6698064614","https://openalex.org/W6729772046","https://openalex.org/W6731900453","https://openalex.org/W6747023955"],"related_works":["https://openalex.org/W2035329725","https://openalex.org/W4376641153","https://openalex.org/W2050788868","https://openalex.org/W4241625287","https://openalex.org/W4250391473","https://openalex.org/W4302292679","https://openalex.org/W2956222435","https://openalex.org/W2027634686","https://openalex.org/W2952283344","https://openalex.org/W2790400419"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":48},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":34},{"year":2018,"cited_by_count":7}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
