{"id":"https://openalex.org/W2805952346","doi":"https://doi.org/10.1093/bioinformatics/bty444","title":"ProAcePred: prokaryote lysine acetylation sites prediction based on elastic net feature optimization","display_name":"ProAcePred: prokaryote lysine acetylation sites prediction based on elastic net feature optimization","publication_year":2018,"publication_date":"2018-05-30","ids":{"openalex":"https://openalex.org/W2805952346","doi":"https://doi.org/10.1093/bioinformatics/bty444","mag":"2805952346","pmid":"https://pubmed.ncbi.nlm.nih.gov/29868863"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty444","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty444","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100611876","display_name":"Guodong Chen","orcid":"https://orcid.org/0000-0001-7671-6281"},"institutions":[{"id":"https://openalex.org/I4210119692","display_name":"Numerical Method (China)","ror":"https://ror.org/02ns8zp42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210119692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guodong Chen","raw_affiliation_strings":["Department of Mathematics and Numerical Simulation and High-Performance Computing Laboratory, School of Sciences"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Numerical Simulation and High-Performance Computing Laboratory, School of Sciences","institution_ids":["https://openalex.org/I4210119692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021992806","display_name":"Man Cao","orcid":"https://orcid.org/0000-0001-9521-6311"},"institutions":[{"id":"https://openalex.org/I4210119692","display_name":"Numerical Method (China)","ror":"https://ror.org/02ns8zp42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210119692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Man Cao","raw_affiliation_strings":["Department of Mathematics and Numerical Simulation and High-Performance Computing Laboratory, School of Sciences"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Numerical Simulation and High-Performance Computing Laboratory, School of Sciences","institution_ids":["https://openalex.org/I4210119692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102240646","display_name":"Kun Luo","orcid":"https://orcid.org/0000-0003-2255-2749"},"institutions":[{"id":"https://openalex.org/I4210119692","display_name":"Numerical Method (China)","ror":"https://ror.org/02ns8zp42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210119692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Luo","raw_affiliation_strings":["Department of Mathematics and Numerical Simulation and High-Performance Computing Laboratory, School of Sciences"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Numerical Simulation and High-Performance Computing Laboratory, School of Sciences","institution_ids":["https://openalex.org/I4210119692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100385962","display_name":"Lina Wang","orcid":"https://orcid.org/0009-0002-8518-8032"},"institutions":[{"id":"https://openalex.org/I141649914","display_name":"Nanchang University","ror":"https://ror.org/042v6xz23","country_code":"CN","type":"education","lineage":["https://openalex.org/I141649914"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lina Wang","raw_affiliation_strings":["Department of Chemistry, College of Chemistry, Nanchang University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, College of Chemistry, Nanchang University, Nanchang, China","institution_ids":["https://openalex.org/I141649914"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006582630","display_name":"Pingping Wen","orcid":"https://orcid.org/0000-0002-5499-1183"},"institutions":[{"id":"https://openalex.org/I141649914","display_name":"Nanchang University","ror":"https://ror.org/042v6xz23","country_code":"CN","type":"education","lineage":["https://openalex.org/I141649914"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pingping Wen","raw_affiliation_strings":["Department of Chemistry, College of Chemistry, Nanchang University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, College of Chemistry, Nanchang University, Nanchang, China","institution_ids":["https://openalex.org/I141649914"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089248160","display_name":"Shaoping Shi","orcid":"https://orcid.org/0000-0003-0045-868X"},"institutions":[{"id":"https://openalex.org/I4210119692","display_name":"Numerical Method (China)","ror":"https://ror.org/02ns8zp42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210119692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shaoping Shi","raw_affiliation_strings":["Department of Mathematics and Numerical Simulation and High-Performance Computing Laboratory, School of Sciences"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Numerical Simulation and High-Performance Computing Laboratory, School of Sciences","institution_ids":["https://openalex.org/I4210119692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5089248160"],"corresponding_institution_ids":["https://openalex.org/I4210119692"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.1142,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.87941998,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"34","issue":"23","first_page":"3999","last_page":"4006"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prokaryote","display_name":"Prokaryote","score":0.9883309602737427},{"id":"https://openalex.org/keywords/acetylation","display_name":"Acetylation","score":0.8814490437507629},{"id":"https://openalex.org/keywords/lysine","display_name":"Lysine","score":0.7321480512619019},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6184159517288208},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5417592525482178},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.49485963582992554},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46055781841278076},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.41053450107574463},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39933115243911743},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.33759307861328125},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.25639885663986206},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24727210402488708},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.22095444798469543},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.15209826827049255},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12194916605949402},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.07047960162162781}],"concepts":[{"id":"https://openalex.org/C2780918051","wikidata":"https://www.wikidata.org/wiki/Q19081","display_name":"Prokaryote","level":3,"score":0.9883309602737427},{"id":"https://openalex.org/C119157956","wikidata":"https://www.wikidata.org/wiki/Q796604","display_name":"Acetylation","level":3,"score":0.8814490437507629},{"id":"https://openalex.org/C2776016237","wikidata":"https://www.wikidata.org/wiki/Q178430","display_name":"Lysine","level":3,"score":0.7321480512619019},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6184159517288208},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5417592525482178},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.49485963582992554},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46055781841278076},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.41053450107574463},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39933115243911743},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.33759307861328125},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.25639885663986206},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24727210402488708},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.22095444798469543},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.15209826827049255},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12194916605949402},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.07047960162162781},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000107","descriptor_name":"Acetylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000107","descriptor_name":"Acetylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000107","descriptor_name":"Acetylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty444","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty444","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29868863","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29868863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2564524915","display_name":null,"funder_award_id":"21305062","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4262614445","display_name":null,"funder_award_id":"20151BAB203022","funder_id":"https://openalex.org/F4320322665","funder_display_name":"Natural Science Foundation of Jiangxi Province"},{"id":"https://openalex.org/G764822973","display_name":null,"funder_award_id":"21665016","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322665","display_name":"Natural Science Foundation of Jiangxi Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W24553703","https://openalex.org/W51585611","https://openalex.org/W805633396","https://openalex.org/W847373262","https://openalex.org/W1510000497","https://openalex.org/W1533191645","https://openalex.org/W1571090306","https://openalex.org/W1748625489","https://openalex.org/W1970899710","https://openalex.org/W1986775087","https://openalex.org/W1987805766","https://openalex.org/W1991199546","https://openalex.org/W1994083229","https://openalex.org/W1999118478","https://openalex.org/W2009540433","https://openalex.org/W2010818132","https://openalex.org/W2017324120","https://openalex.org/W2034614265","https://openalex.org/W2036158314","https://openalex.org/W2040631816","https://openalex.org/W2045071318","https://openalex.org/W2052837845","https://openalex.org/W2069217708","https://openalex.org/W2084246818","https://openalex.org/W2087158205","https://openalex.org/W2102621836","https://openalex.org/W2103404876","https://openalex.org/W2104813013","https://openalex.org/W2116062594","https://openalex.org/W2121082043","https://openalex.org/W2122825543","https://openalex.org/W2124779485","https://openalex.org/W2127795028","https://openalex.org/W2135046866","https://openalex.org/W2141818629","https://openalex.org/W2143210482","https://openalex.org/W2146628513","https://openalex.org/W2151984950","https://openalex.org/W2152339342","https://openalex.org/W2154444348","https://openalex.org/W2156125289","https://openalex.org/W2159199134","https://openalex.org/W2168146428","https://openalex.org/W2194211099","https://openalex.org/W2281873770","https://openalex.org/W2289481940","https://openalex.org/W2326004494","https://openalex.org/W2329881077","https://openalex.org/W2399634880","https://openalex.org/W2564829293","https://openalex.org/W2565374810","https://openalex.org/W2610582292","https://openalex.org/W6602110790"],"related_works":["https://openalex.org/W2747330128","https://openalex.org/W2890475088","https://openalex.org/W2014390271","https://openalex.org/W4313312236","https://openalex.org/W2597448223","https://openalex.org/W2985810429","https://openalex.org/W2030620740","https://openalex.org/W2028662668","https://openalex.org/W2924775120","https://openalex.org/W2805952346"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
