{"id":"https://openalex.org/W2951422523","doi":"https://doi.org/10.1093/bioinformatics/bty440","title":"deepNF: deep network fusion for protein function prediction","display_name":"deepNF: deep network fusion for protein function prediction","publication_year":2018,"publication_date":"2018-05-28","ids":{"openalex":"https://openalex.org/W2951422523","doi":"https://doi.org/10.1093/bioinformatics/bty440","mag":"2951422523","pmid":"https://pubmed.ncbi.nlm.nih.gov/29868758"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/22/3873/26441341/bty440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/22/3873/26441341/bty440.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061943951","display_name":"Vladimir Gligorijevi\u0107","orcid":"https://orcid.org/0000-0002-5165-0973"},"institutions":[{"id":"https://openalex.org/I4210107338","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210107338"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vladimir Gligorijevi\u0107","raw_affiliation_strings":["Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA","institution_ids":["https://openalex.org/I4210107338"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054722105","display_name":"Meet Barot","orcid":"https://orcid.org/0000-0001-7228-0644"},"institutions":[{"id":"https://openalex.org/I4210107338","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210107338"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meet Barot","raw_affiliation_strings":["Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA","institution_ids":["https://openalex.org/I4210107338"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055203249","display_name":"Richard Bonneau","orcid":"https://orcid.org/0000-0003-4354-7906"},"institutions":[{"id":"https://openalex.org/I4210107338","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210107338"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Richard Bonneau","raw_affiliation_strings":["Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA","Center for Data Science, New York University, New York, NY, USA","Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA","institution_ids":["https://openalex.org/I4210107338"]},{"raw_affiliation_string":"Center for Data Science, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5055203249","https://openalex.org/A5061943951"],"corresponding_institution_ids":["https://openalex.org/I4210107338","https://openalex.org/I57206974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":11.0766,"has_fulltext":false,"cited_by_count":237,"citation_normalized_percentile":{"value":0.99071637,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"34","issue":"22","first_page":"3873","last_page":"3881"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.625715970993042},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5281239151954651},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.5066550374031067},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.49112841486930847},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.43285080790519714},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3391144871711731},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3323133885860443},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10627537965774536},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.058082640171051025}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.625715970993042},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5281239151954651},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.5066550374031067},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.49112841486930847},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.43285080790519714},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3391144871711731},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3323133885860443},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10627537965774536},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.058082640171051025},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/22/3873/26441341/bty440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29868758","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29868758","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5180571","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6223364","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6223364","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6223364","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/22/3873/26441341/bty440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1516000063","display_name":null,"funder_award_id":"2R01GM032877-25A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1874832790","display_name":null,"funder_award_id":"MCB-1412232","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3939206924","display_name":null,"funder_award_id":"IOS-0922738","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4258442055","display_name":null,"funder_award_id":"MCB-1158273","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4915021293","display_name":null,"funder_award_id":"MCB-0929338","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6775207956","display_name":null,"funder_award_id":"MCB-1355462","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7638458883","display_name":null,"funder_award_id":"IOS-1339362","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306164","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727"},{"id":"https://openalex.org/F4320309290","display_name":"New York University","ror":"https://ror.org/0190ak572"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2951422523.pdf","grobid_xml":"https://content.openalex.org/works/W2951422523.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1849803292","https://openalex.org/W1853598593","https://openalex.org/W1973247012","https://openalex.org/W1976526581","https://openalex.org/W1993754619","https://openalex.org/W2007479878","https://openalex.org/W2044917239","https://openalex.org/W2086607080","https://openalex.org/W2093813380","https://openalex.org/W2102814386","https://openalex.org/W2105924489","https://openalex.org/W2108984616","https://openalex.org/W2117486996","https://openalex.org/W2123157758","https://openalex.org/W2124649441","https://openalex.org/W2125118217","https://openalex.org/W2125282516","https://openalex.org/W2125939853","https://openalex.org/W2145094598","https://openalex.org/W2147461734","https://openalex.org/W2153635508","https://openalex.org/W2154851992","https://openalex.org/W2155440340","https://openalex.org/W2161444669","https://openalex.org/W2166468869","https://openalex.org/W2168118433","https://openalex.org/W2227395312","https://openalex.org/W2366913357","https://openalex.org/W2393319904","https://openalex.org/W2502949459","https://openalex.org/W2556519015","https://openalex.org/W2605179600","https://openalex.org/W2608702473","https://openalex.org/W2617837836","https://openalex.org/W2952639490","https://openalex.org/W2962756421","https://openalex.org/W2997574889","https://openalex.org/W3104097132","https://openalex.org/W4293282039","https://openalex.org/W6681096077"],"related_works":["https://openalex.org/W2099421762","https://openalex.org/W2530546662","https://openalex.org/W2967030268","https://openalex.org/W2961085424","https://openalex.org/W2185253430","https://openalex.org/W4210345652","https://openalex.org/W4224009465","https://openalex.org/W1984333081","https://openalex.org/W2945063165","https://openalex.org/W4306674287"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":53},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":27},{"year":2018,"cited_by_count":7}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
