{"id":"https://openalex.org/W2950609999","doi":"https://doi.org/10.1093/bioinformatics/bty223","title":"DeepSimulator: a deep simulator for Nanopore sequencing","display_name":"DeepSimulator: a deep simulator for Nanopore sequencing","publication_year":2018,"publication_date":"2018-04-04","ids":{"openalex":"https://openalex.org/W2950609999","doi":"https://doi.org/10.1093/bioinformatics/bty223","mag":"2950609999"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty223","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/2899/25703008/bty223.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/2899/25703008/bty223.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100345753","display_name":"Yu Li","orcid":"https://orcid.org/0000-0002-3664-6722"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Yu Li","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100690212","display_name":"Renmin Han","orcid":"https://orcid.org/0000-0003-4761-6526"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Renmin Han","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057221853","display_name":"Chongwei Bi","orcid":"https://orcid.org/0000-0003-2108-1551"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Chongwei Bi","raw_affiliation_strings":["Biological and Environmental Sciences and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Biological and Environmental Sciences and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100361471","display_name":"Mo Li","orcid":"https://orcid.org/0000-0003-0827-8907"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Mo Li","raw_affiliation_strings":["Biological and Environmental Sciences and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Biological and Environmental Sciences and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100371324","display_name":"Sheng Wang","orcid":"https://orcid.org/0000-0003-4210-1670"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Sheng Wang","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Xin Gao","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100371324","https://openalex.org/A5100618900"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.2131,"has_fulltext":true,"cited_by_count":118,"citation_normalized_percentile":{"value":0.97446708,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"34","issue":"17","first_page":"2899","last_page":"2908"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.7488257884979248},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7482590675354004},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6911361217498779},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6394733190536499},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.599705159664154},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5814149379730225},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5267695188522339},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.48387396335601807},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.47985953092575073},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4328681230545044},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4273444414138794},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3284623622894287},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.29673707485198975},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21275565028190613},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12085142731666565},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11099269986152649}],"concepts":[{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.7488257884979248},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7482590675354004},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6911361217498779},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6394733190536499},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.599705159664154},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5814149379730225},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5267695188522339},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.48387396335601807},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.47985953092575073},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4328681230545044},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4273444414138794},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3284623622894287},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.29673707485198975},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21275565028190613},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12085142731666565},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11099269986152649},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty223","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/2899/25703008/bty223.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5083562","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6129308","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6129308","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6129308","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/626751","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/626751","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty223","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/2899/25703008/bty223.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2950609999.pdf","grobid_xml":"https://content.openalex.org/works/W2950609999.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W157958861","https://openalex.org/W1519781644","https://openalex.org/W2079735306","https://openalex.org/W2108234281","https://openalex.org/W2118526609","https://openalex.org/W2118846558","https://openalex.org/W2144994235","https://openalex.org/W2150131459","https://openalex.org/W2152331922","https://openalex.org/W2158714788","https://openalex.org/W2191690548","https://openalex.org/W2194172909","https://openalex.org/W2317495605","https://openalex.org/W2337261418","https://openalex.org/W2346680365","https://openalex.org/W2464063823","https://openalex.org/W2467325308","https://openalex.org/W2514454343","https://openalex.org/W2517617279","https://openalex.org/W2521004200","https://openalex.org/W2551884408","https://openalex.org/W2565424224","https://openalex.org/W2575750030","https://openalex.org/W2591367881","https://openalex.org/W2607669908","https://openalex.org/W2609126500","https://openalex.org/W2611922188","https://openalex.org/W2739636023","https://openalex.org/W2766352633","https://openalex.org/W2914885528","https://openalex.org/W2949279762","https://openalex.org/W2950266744","https://openalex.org/W2950354111","https://openalex.org/W2952474440","https://openalex.org/W2952609831","https://openalex.org/W2953020124","https://openalex.org/W3003166701","https://openalex.org/W3102863871","https://openalex.org/W4232052881","https://openalex.org/W4297585095"],"related_works":["https://openalex.org/W2952788979","https://openalex.org/W2774675543","https://openalex.org/W2119052929","https://openalex.org/W2326282944","https://openalex.org/W2330402197","https://openalex.org/W1519765314","https://openalex.org/W3197006535","https://openalex.org/W2763726643","https://openalex.org/W3201371206","https://openalex.org/W2420153309"],"abstract_inverted_index":{"Abstract":[0],"Motivation":[1],"Oxford":[2],"Nanopore":[3,28,72,104],"sequencing":[4,9,29,73,140],"is":[5,31,80],"a":[6,26,92,108,122,129,186],"rapidly":[7],"developed":[8,45],"technology":[10],"in":[11,65,236,241],"recent":[12],"years.":[13],"To":[14],"keep":[15],"pace":[16],"with":[17,198],"the":[18,21,35,49,59,67,71,75,81,100,117,139,153,164,169,173,181,196,210,215,219,226,232],"explosion":[19],"of":[20,58,70,78,83,103,180,228,234],"downstream":[22],"data":[23,37,260],"analytical":[24],"tools,":[25],"versatile":[27],"simulator":[30],"needed":[32],"to":[33,41,98,132,163,189,204,230],"complement":[34],"experimental":[36],"as":[38,40,218],"well":[39],"benchmark":[42],"those":[43],"newly":[44],"tools.":[46],"However,":[47],"all":[48],"currently":[50],"available":[51,262],"simulators":[52],"are":[53,160,261],"based":[54,95],"on":[55],"simple":[56],"statistics":[57],"produced":[60],"reads,":[61,183],"which":[62,79],"have":[63,213],"difficulty":[64],"capturing":[66],"complex":[68],"nature":[69],"procedure,":[74],"main":[76],"task":[77],"generation":[82],"raw":[84],"electrical":[85,118],"current":[86,119],"signals.":[87],"Results":[88],"Here":[89],"we":[90,115,184],"propose":[91],"deep":[93,124],"learning":[94,125],"simulator,":[96],"DeepSimulator,":[97],"mimic":[99],"entire":[101],"pipeline":[102],"sequencing.":[105],"Starting":[106],"from":[107,202],"given":[109],"reference":[110],"genome":[111],"or":[112],"assembled":[113],"contigs,":[114],"simulate":[116],"signals":[120,154,167],"by":[121,128,156,172,209],"context-dependent":[123,158],"model,":[126],"followed":[127],"base-calling":[130],"procedure":[131,141],"yield":[133],"simulated":[134,182],"reads.":[135],"This":[136],"workflow":[137],"mimics":[138],"more":[142,161],"naturally.":[143],"The":[144,206,249],"thorough":[145],"experiments":[146],"performed":[147],"across":[148],"four":[149],"species":[150],"show":[151],"that":[152,192],"generated":[155,171,208],"our":[157],"model":[159],"similar":[162],"experimentally":[165],"obtained":[166],"than":[168],"ones":[170],"official":[174],"context-independent":[175],"pore":[176],"model.":[177],"In":[178],"terms":[179],"provide":[185],"parameter":[187,212],"interface":[188],"users":[190],"so":[191],"they":[193],"can":[194,251],"obtain":[195],"reads":[197,207],"different":[199],"accuracies":[200],"ranging":[201],"83":[203],"97%.":[205],"default":[211],"almost":[214],"same":[216],"properties":[217],"real":[220],"data.":[221],"Two":[222],"case":[223],"studies":[224],"demonstrate":[225],"application":[227],"DeepSimulator":[229],"benefit":[231],"development":[233],"tools":[235],"de":[237],"novo":[238],"assembly":[239],"and":[240,247],"low":[242],"coverage":[243],"SNP":[244],"detection.":[245],"Availability":[246],"implementation":[248],"software":[250],"be":[252],"accessed":[253],"freely":[254],"at:":[255],"https://github.com/lykaust15/DeepSimulator.":[256],"Supplementary":[257,259],"information":[258],"at":[263],"Bioinformatics":[264],"online.":[265]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":25},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":8}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
