{"id":"https://openalex.org/W2950801816","doi":"https://doi.org/10.1093/bioinformatics/bty207","title":"Building online genomics applications using BioPyramid","display_name":"Building online genomics applications using BioPyramid","publication_year":2018,"publication_date":"2018-03-28","ids":{"openalex":"https://openalex.org/W2950801816","doi":"https://doi.org/10.1093/bioinformatics/bty207","mag":"2950801816","pmid":"https://pubmed.ncbi.nlm.nih.gov/29617932"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/3055/25702973/bty207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/3055/25702973/bty207.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020624860","display_name":"Liam Stephenson","orcid":null},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Liam Stephenson","raw_affiliation_strings":["Division of Molecular Medicine, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Medicine, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia","institution_ids":["https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015274615","display_name":"Yoshua Wakeham","orcid":null},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yoshua Wakeham","raw_affiliation_strings":["Division of Molecular Medicine, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Medicine, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia","institution_ids":["https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071389758","display_name":"Nick Seidenman","orcid":null},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nick Seidenman","raw_affiliation_strings":["Division of Molecular Medicine, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Medicine, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia","institution_ids":["https://openalex.org/I196021976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076899885","display_name":"Jarny Choi","orcid":"https://orcid.org/0000-0002-7788-8867"},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jarny Choi","raw_affiliation_strings":["Department of Anatomy and Neuroscience, The University of Melbourne, Victoria, Australia","Division of Molecular Medicine, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Anatomy and Neuroscience, The University of Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Division of Molecular Medicine, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia","institution_ids":["https://openalex.org/I196021976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5076899885"],"corresponding_institution_ids":["https://openalex.org/I165779595","https://openalex.org/I196021976"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2758,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.5804608,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"34","issue":"17","first_page":"3055","last_page":"3057"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9250296354293823},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8087264895439148},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.8049377202987671},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6695480346679688},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6286102533340454},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.621116578578949},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.6026614308357239},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.44616973400115967},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4168499708175659},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36898595094680786},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.36220061779022217},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31901347637176514},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22614410519599915},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13950154185295105}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9250296354293823},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8087264895439148},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.8049377202987671},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6695480346679688},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6286102533340454},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.621116578578949},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.6026614308357239},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.44616973400115967},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4168499708175659},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36898595094680786},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.36220061779022217},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31901347637176514},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22614410519599915},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13950154185295105}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/3055/25702973/bty207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29617932","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29617932","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/3055/25702973/bty207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5799999833106995}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310744","display_name":"Science and Industry Endowment Fund","ror":"https://ror.org/04c4mj004"},{"id":"https://openalex.org/F4320320410","display_name":"Stem Cells Australia","ror":"https://ror.org/03antpb48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2950801816.pdf","grobid_xml":"https://content.openalex.org/works/W2950801816.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1966231959","https://openalex.org/W2096525273","https://openalex.org/W2503141921","https://openalex.org/W4234797890","https://openalex.org/W4250359879"],"related_works":["https://openalex.org/W4319771345","https://openalex.org/W2888529970","https://openalex.org/W4229928981","https://openalex.org/W3164495242","https://openalex.org/W2098020585","https://openalex.org/W2802837524","https://openalex.org/W2568886467","https://openalex.org/W121857219","https://openalex.org/W2280302621","https://openalex.org/W2507206891"],"abstract_inverted_index":{"Freely":[0],"available":[1],"at":[2],"http://github.com/jarny/biopyramid.":[3],"Implemented":[4],"in":[5],"python":[6],"and":[7],"javascript.":[8]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
