{"id":"https://openalex.org/W2949960840","doi":"https://doi.org/10.1093/bioinformatics/bty175","title":"Understanding sequencing data as compositions: an outlook and review","display_name":"Understanding sequencing data as compositions: an outlook and review","publication_year":2018,"publication_date":"2018-03-26","ids":{"openalex":"https://openalex.org/W2949960840","doi":"https://doi.org/10.1093/bioinformatics/bty175","mag":"2949960840","pmid":"https://pubmed.ncbi.nlm.nih.gov/29608657"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty175","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty175","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2870/25441977/bty175.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2870/25441977/bty175.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100780236","display_name":"Thomas P. Quinn","orcid":"https://orcid.org/0000-0003-0286-6329"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Thomas P Quinn","raw_affiliation_strings":["Bioinformatics Core Research Group, Deakin University, Geelong, Australia"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Core Research Group, Deakin University, Geelong, Australia","institution_ids":["https://openalex.org/I149704539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085000737","display_name":"Ionas Erb","orcid":"https://orcid.org/0000-0002-2331-9714"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ionas Erb","raw_affiliation_strings":["Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","Universitat Pompeu Fabra (UPF), Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF), Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083686885","display_name":"Mark F. Richardson","orcid":"https://orcid.org/0000-0002-1650-0064"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mark F Richardson","raw_affiliation_strings":["Bioinformatics Core Research Group, Deakin University, Geelong, Australia","Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, Australia"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Core Research Group, Deakin University, Geelong, Australia","institution_ids":["https://openalex.org/I149704539"]},{"raw_affiliation_string":"Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, Australia","institution_ids":["https://openalex.org/I149704539"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015696847","display_name":"Tamsyn M. Crowley","orcid":"https://orcid.org/0000-0002-3698-8917"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]},{"id":"https://openalex.org/I861696136","display_name":"Poultry CRC","ror":"https://ror.org/01tgswh16","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I861696136"]},{"id":"https://openalex.org/I90745801","display_name":"University of New England","ror":"https://ror.org/04r659a56","country_code":"AU","type":"education","lineage":["https://openalex.org/I90745801"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tamsyn M Crowley","raw_affiliation_strings":["Bioinformatics Core Research Group, Deakin University, Geelong, Australia","Poultry Hub Australia, University of New England, Armidale, Australia"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Core Research Group, Deakin University, Geelong, Australia","institution_ids":["https://openalex.org/I149704539"]},{"raw_affiliation_string":"Poultry Hub Australia, University of New England, Armidale, Australia","institution_ids":["https://openalex.org/I861696136","https://openalex.org/I90745801"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100780236"],"corresponding_institution_ids":["https://openalex.org/I149704539"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":21.8106,"has_fulltext":true,"cited_by_count":353,"citation_normalized_percentile":{"value":0.99452989,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"34","issue":"16","first_page":"2870","last_page":"2878"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12282","display_name":"Mineral Processing and Grinding","score":0.9585999846458435,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10399","display_name":"Hydrocarbon exploration and reservoir analysis","score":0.9110000133514404,"subfield":{"id":"https://openalex.org/subfields/2211","display_name":"Mechanics of Materials"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compositional-data","display_name":"Compositional data","score":0.8811078071594238},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6895945072174072},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5383805632591248},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.5037488341331482},{"id":"https://openalex.org/keywords/euclidean-distance","display_name":"Euclidean distance","score":0.43347060680389404},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4314964711666107},{"id":"https://openalex.org/keywords/data-transformation","display_name":"Data transformation","score":0.428053617477417},{"id":"https://openalex.org/keywords/database-normalization","display_name":"Database normalization","score":0.4184991717338562},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.4179787039756775},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1856929361820221},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.14408192038536072},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.1157912015914917}],"concepts":[{"id":"https://openalex.org/C2781147490","wikidata":"https://www.wikidata.org/wiki/Q5156808","display_name":"Compositional data","level":2,"score":0.8811078071594238},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6895945072174072},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5383805632591248},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.5037488341331482},{"id":"https://openalex.org/C120174047","wikidata":"https://www.wikidata.org/wiki/Q847073","display_name":"Euclidean distance","level":2,"score":0.43347060680389404},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4314964711666107},{"id":"https://openalex.org/C150670458","wikidata":"https://www.wikidata.org/wiki/Q4272815","display_name":"Data transformation","level":3,"score":0.428053617477417},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.4184991717338562},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.4179787039756775},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1856929361820221},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.14408192038536072},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.1157912015914917},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bty175","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty175","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2870/25441977/bty175.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29608657","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29608657","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/37289","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/37289","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:5037978","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6084572","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6084572","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6084572","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty175","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty175","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2870/25441977/bty175.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2949960840.pdf","grobid_xml":"https://content.openalex.org/works/W2949960840.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W149168848","https://openalex.org/W156819909","https://openalex.org/W1523266228","https://openalex.org/W1545325301","https://openalex.org/W1851943331","https://openalex.org/W1864161604","https://openalex.org/W1981509058","https://openalex.org/W1984215279","https://openalex.org/W1985161570","https://openalex.org/W1988187361","https://openalex.org/W1991669423","https://openalex.org/W2005825070","https://openalex.org/W2009458183","https://openalex.org/W2057642127","https://openalex.org/W2074414424","https://openalex.org/W2076596567","https://openalex.org/W2078112764","https://openalex.org/W2081098333","https://openalex.org/W2092569525","https://openalex.org/W2104868463","https://openalex.org/W2107018762","https://openalex.org/W2108303460","https://openalex.org/W2112408821","https://openalex.org/W2113977541","https://openalex.org/W2114104545","https://openalex.org/W2118526609","https://openalex.org/W2119599489","https://openalex.org/W2123579165","https://openalex.org/W2127274965","https://openalex.org/W2131088968","https://openalex.org/W2137526110","https://openalex.org/W2138058993","https://openalex.org/W2138398659","https://openalex.org/W2147109452","https://openalex.org/W2152239989","https://openalex.org/W2153755764","https://openalex.org/W2156975150","https://openalex.org/W2165673467","https://openalex.org/W2165909549","https://openalex.org/W2166325326","https://openalex.org/W2225783224","https://openalex.org/W2226446765","https://openalex.org/W2236822143","https://openalex.org/W2292790696","https://openalex.org/W2323052220","https://openalex.org/W2340210804","https://openalex.org/W2400818826","https://openalex.org/W2552344045","https://openalex.org/W2566567183","https://openalex.org/W2571745526","https://openalex.org/W2575771770","https://openalex.org/W2756730981","https://openalex.org/W2785509713","https://openalex.org/W2904250115","https://openalex.org/W2950329612","https://openalex.org/W3123608026","https://openalex.org/W3123662336","https://openalex.org/W3147425560","https://openalex.org/W4299542564","https://openalex.org/W6631383449","https://openalex.org/W6678907343"],"related_works":["https://openalex.org/W4241705247","https://openalex.org/W2145362441","https://openalex.org/W2101622345","https://openalex.org/W2582603276","https://openalex.org/W3134304369","https://openalex.org/W2904308980","https://openalex.org/W4386281023","https://openalex.org/W4312138714","https://openalex.org/W2113286112","https://openalex.org/W4320013596"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":45},{"year":2024,"cited_by_count":57},{"year":2023,"cited_by_count":55},{"year":2022,"cited_by_count":56},{"year":2021,"cited_by_count":57},{"year":2020,"cited_by_count":42},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":8}],"updated_date":"2026-04-01T17:29:45.350535","created_date":"2025-10-10T00:00:00"}
