{"id":"https://openalex.org/W2792974556","doi":"https://doi.org/10.1093/bioinformatics/bty051","title":"Novel overlapping subgraph clustering for the detection of antigen epitopes","display_name":"Novel overlapping subgraph clustering for the detection of antigen epitopes","publication_year":2018,"publication_date":"2018-02-01","ids":{"openalex":"https://openalex.org/W2792974556","doi":"https://doi.org/10.1093/bioinformatics/bty051","mag":"2792974556","pmid":"https://pubmed.ncbi.nlm.nih.gov/29409062"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/12/2061/25047818/bty051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/12/2061/25047818/bty051.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033765170","display_name":"Liang Zhao","orcid":"https://orcid.org/0000-0003-3974-9206"},"institutions":[{"id":"https://openalex.org/I1285929390","display_name":"Hubei University of Medicine","ror":"https://ror.org/01dr2b756","country_code":"CN","type":"education","lineage":["https://openalex.org/I1285929390"]},{"id":"https://openalex.org/I150807315","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167","country_code":"CN","type":"education","lineage":["https://openalex.org/I150807315"]},{"id":"https://openalex.org/I4210117378","display_name":"Taihe Hospital","ror":"https://ror.org/02ftdsn70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210117378"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liang Zhao","raw_affiliation_strings":["Department of Computer Science, School of Computing and Electronic Information, Guangxi University, Nanning, China","Department of Precision Medicine Research Center, Taihe Hospital, Hubei University of Medicine, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, School of Computing and Electronic Information, Guangxi University, Nanning, China","institution_ids":["https://openalex.org/I150807315"]},{"raw_affiliation_string":"Department of Precision Medicine Research Center, Taihe Hospital, Hubei University of Medicine, Hubei, China","institution_ids":["https://openalex.org/I1285929390","https://openalex.org/I4210117378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113746221","display_name":"Shaogui Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I150807315","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167","country_code":"CN","type":"education","lineage":["https://openalex.org/I150807315"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaogui Wu","raw_affiliation_strings":["Department of Computer Science, School of Computing and Electronic Information, Guangxi University, Nanning, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, School of Computing and Electronic Information, Guangxi University, Nanning, China","institution_ids":["https://openalex.org/I150807315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040693922","display_name":"Jia-wen JIANG","orcid":null},"institutions":[{"id":"https://openalex.org/I1285929390","display_name":"Hubei University of Medicine","ror":"https://ror.org/01dr2b756","country_code":"CN","type":"education","lineage":["https://openalex.org/I1285929390"]},{"id":"https://openalex.org/I4210117378","display_name":"Taihe Hospital","ror":"https://ror.org/02ftdsn70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210117378"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiawen Jiang","raw_affiliation_strings":["Department of Precision Medicine Research Center, Taihe Hospital, Hubei University of Medicine, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Department of Precision Medicine Research Center, Taihe Hospital, Hubei University of Medicine, Hubei, China","institution_ids":["https://openalex.org/I1285929390","https://openalex.org/I4210117378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046619834","display_name":"Wencui Li","orcid":null},"institutions":[{"id":"https://openalex.org/I1285929390","display_name":"Hubei University of Medicine","ror":"https://ror.org/01dr2b756","country_code":"CN","type":"education","lineage":["https://openalex.org/I1285929390"]},{"id":"https://openalex.org/I4210117378","display_name":"Taihe Hospital","ror":"https://ror.org/02ftdsn70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210117378"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wencui Li","raw_affiliation_strings":["Department of Precision Medicine Research Center, Taihe Hospital, Hubei University of Medicine, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Department of Precision Medicine Research Center, Taihe Hospital, Hubei University of Medicine, Hubei, China","institution_ids":["https://openalex.org/I1285929390","https://openalex.org/I4210117378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102713147","display_name":"Jie Luo","orcid":"https://orcid.org/0000-0003-1361-9200"},"institutions":[{"id":"https://openalex.org/I1285929390","display_name":"Hubei University of Medicine","ror":"https://ror.org/01dr2b756","country_code":"CN","type":"education","lineage":["https://openalex.org/I1285929390"]},{"id":"https://openalex.org/I4210117378","display_name":"Taihe Hospital","ror":"https://ror.org/02ftdsn70","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210117378"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jie Luo","raw_affiliation_strings":["Department of Precision Medicine Research Center, Taihe Hospital, Hubei University of Medicine, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Department of Precision Medicine Research Center, Taihe Hospital, Hubei University of Medicine, Hubei, China","institution_ids":["https://openalex.org/I1285929390","https://openalex.org/I4210117378"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017861049","display_name":"Jinyan Li","orcid":"https://orcid.org/0000-0003-1833-7413"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jinyan Li","raw_affiliation_strings":["Department of Data Science, Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Broadway, NSW 2007, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Data Science, Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Broadway, NSW 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5017861049","https://openalex.org/A5033765170","https://openalex.org/A5102713147"],"corresponding_institution_ids":["https://openalex.org/I114017466","https://openalex.org/I1285929390","https://openalex.org/I150807315","https://openalex.org/I4210117378"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3723,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.59638942,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"34","issue":"12","first_page":"2061","last_page":"2068"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9772427678108215},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5959328413009644},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.5897124409675598},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5340868830680847},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5092383623123169},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3268790543079376},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.259996235370636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20434609055519104},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16561737656593323}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9772427678108215},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5959328413009644},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.5897124409675598},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5340868830680847},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5092383623123169},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3268790543079376},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.259996235370636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20434609055519104},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16561737656593323}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/12/2061/25047818/bty051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29409062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29409062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/132332","is_oa":false,"landing_page_url":"http://hdl.handle.net/10453/132332","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/12/2061/25047818/bty051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4214475936","display_name":null,"funder_award_id":"2016GXNSFCA380006","funder_id":"https://openalex.org/F4320322768","funder_display_name":"Natural Science Foundation of Guangxi Province"}],"funders":[{"id":"https://openalex.org/F4320322768","display_name":"Natural Science Foundation of Guangxi Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2792974556.pdf","grobid_xml":"https://content.openalex.org/works/W2792974556.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1484811165","https://openalex.org/W1497815517","https://openalex.org/W1558813989","https://openalex.org/W1736726159","https://openalex.org/W1829437510","https://openalex.org/W1975304761","https://openalex.org/W1982607933","https://openalex.org/W1988966248","https://openalex.org/W2004216886","https://openalex.org/W2040956707","https://openalex.org/W2057793636","https://openalex.org/W2079816176","https://openalex.org/W2082258479","https://openalex.org/W2092240438","https://openalex.org/W2094983680","https://openalex.org/W2100316154","https://openalex.org/W2101181377","https://openalex.org/W2103053267","https://openalex.org/W2104776061","https://openalex.org/W2108760877","https://openalex.org/W2110298304","https://openalex.org/W2121127081","https://openalex.org/W2127048411","https://openalex.org/W2127322768","https://openalex.org/W2130479394","https://openalex.org/W2132629607","https://openalex.org/W2137575262","https://openalex.org/W2138815567","https://openalex.org/W2153504150","https://openalex.org/W2153635508","https://openalex.org/W2156125289","https://openalex.org/W2158781610","https://openalex.org/W2158899863","https://openalex.org/W2163174206","https://openalex.org/W2163480486","https://openalex.org/W2164928285","https://openalex.org/W2169760021","https://openalex.org/W2341432800","https://openalex.org/W2568765466","https://openalex.org/W2611314002","https://openalex.org/W2736475384","https://openalex.org/W2964273740","https://openalex.org/W3102641634","https://openalex.org/W4320800886","https://openalex.org/W6651599874"],"related_works":["https://openalex.org/W1979044599","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W2205639271"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
