{"id":"https://openalex.org/W2762092008","doi":"https://doi.org/10.1093/bioinformatics/btx649","title":"UC2 search: using unique connectivity of uncharged compounds for metabolite annotation by database searching in mass spectrometry-based metabolomics","display_name":"UC2 search: using unique connectivity of uncharged compounds for metabolite annotation by database searching in mass spectrometry-based metabolomics","publication_year":2017,"publication_date":"2017-10-11","ids":{"openalex":"https://openalex.org/W2762092008","doi":"https://doi.org/10.1093/bioinformatics/btx649","mag":"2762092008","pmid":"https://pubmed.ncbi.nlm.nih.gov/29040459"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx649","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx649","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/4/698/25117357/btx649.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/4/698/25117357/btx649.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029109752","display_name":"Nozomu Sakurai","orcid":"https://orcid.org/0000-0001-5861-6228"},"institutions":[{"id":"https://openalex.org/I4210148592","display_name":"Kazusa DNA Research Institute","ror":"https://ror.org/04pnjx786","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210148592"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Nozomu Sakurai","raw_affiliation_strings":["Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba, Japan","institution_ids":["https://openalex.org/I4210148592"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062830009","display_name":"Takafumi Narise","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148592","display_name":"Kazusa DNA Research Institute","ror":"https://ror.org/04pnjx786","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210148592"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takafumi Narise","raw_affiliation_strings":["Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba, Japan","institution_ids":["https://openalex.org/I4210148592"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055181734","display_name":"Joon-Soo Sim","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090624","display_name":"National Institute of Agricultural Science and Technology","ror":"https://ror.org/000vy8681","country_code":"KR","type":"other","lineage":["https://openalex.org/I4210090624"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Joon-Soo Sim","raw_affiliation_strings":["Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Korea","institution_ids":["https://openalex.org/I4210090624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028464895","display_name":"Chang\u2010Muk Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090624","display_name":"National Institute of Agricultural Science and Technology","ror":"https://ror.org/000vy8681","country_code":"KR","type":"other","lineage":["https://openalex.org/I4210090624"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Chang-Muk Lee","raw_affiliation_strings":["Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Jeonju, Korea","institution_ids":["https://openalex.org/I4210090624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033445674","display_name":"Chiaki Ikeda","orcid":"https://orcid.org/0000-0002-3598-9950"},"institutions":[{"id":"https://openalex.org/I4210148592","display_name":"Kazusa DNA Research Institute","ror":"https://ror.org/04pnjx786","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210148592"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Chiaki Ikeda","raw_affiliation_strings":["Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba, Japan","institution_ids":["https://openalex.org/I4210148592"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048817950","display_name":"Nayumi Akimoto","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148592","display_name":"Kazusa DNA Research Institute","ror":"https://ror.org/04pnjx786","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210148592"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Nayumi Akimoto","raw_affiliation_strings":["Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba, Japan","institution_ids":["https://openalex.org/I4210148592"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046567908","display_name":"Shigehiko Kanaya","orcid":"https://orcid.org/0000-0002-2147-6900"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shigehiko Kanaya","raw_affiliation_strings":["Graduate School of Information Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Information Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, Japan","institution_ids":["https://openalex.org/I75917431"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5029109752"],"corresponding_institution_ids":["https://openalex.org/I4210148592"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5409,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.65788299,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"34","issue":"4","first_page":"698","last_page":"700"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemical-nomenclature","display_name":"Chemical nomenclature","score":0.6779210567474365},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5922594666481018},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.5778022408485413},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5563188195228577},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5476171374320984},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5392917394638062},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5292274951934814},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4673369824886322},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.4551328718662262},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3936813771724701},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.339909166097641},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.10777345299720764},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0830761194229126}],"concepts":[{"id":"https://openalex.org/C125832229","wikidata":"https://www.wikidata.org/wiki/Q6503924","display_name":"Chemical nomenclature","level":2,"score":0.6779210567474365},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5922594666481018},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.5778022408485413},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5563188195228577},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5476171374320984},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5392917394638062},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5292274951934814},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4673369824886322},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.4551328718662262},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3936813771724701},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.339909166097641},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.10777345299720764},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0830761194229126},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008970","descriptor_name":"Molecular Weight","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008970","descriptor_name":"Molecular Weight","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008970","descriptor_name":"Molecular Weight","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btx649","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx649","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/4/698/25117357/btx649.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29040459","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29040459","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5860614","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860614","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx649","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx649","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/4/698/25117357/btx649.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5099999904632568,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322035","display_name":"Rural Development Administration","ror":"https://ror.org/03xs9yg50"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2762092008.pdf","grobid_xml":"https://content.openalex.org/works/W2762092008.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1480161928","https://openalex.org/W1976892175","https://openalex.org/W2006607885","https://openalex.org/W2063028213","https://openalex.org/W2075797178","https://openalex.org/W2087563523","https://openalex.org/W2102145367","https://openalex.org/W2106193212","https://openalex.org/W2110256992","https://openalex.org/W2114688451","https://openalex.org/W2116687544","https://openalex.org/W2124316895","https://openalex.org/W2127553917","https://openalex.org/W2128167103","https://openalex.org/W2136555527","https://openalex.org/W2399935345","https://openalex.org/W2622236128"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390777183","https://openalex.org/W4386568883","https://openalex.org/W1882848237","https://openalex.org/W1892467659","https://openalex.org/W4252772812","https://openalex.org/W2972393600","https://openalex.org/W1500327619","https://openalex.org/W2064815566"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
