{"id":"https://openalex.org/W2638023010","doi":"https://doi.org/10.1093/bioinformatics/btx402","title":"QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data","display_name":"QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data","publication_year":2017,"publication_date":"2017-06-15","ids":{"openalex":"https://openalex.org/W2638023010","doi":"https://doi.org/10.1093/bioinformatics/btx402","mag":"2638023010","pmid":"https://pubmed.ncbi.nlm.nih.gov/29304222"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx402","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/163/25113518/btx402.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/163/25113518/btx402.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052456631","display_name":"Pavel Skums","orcid":"https://orcid.org/0000-0003-4007-5624"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pavel Skums","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","Department of Computer Science, Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]},{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072751459","display_name":"Alex Zelikovsky","orcid":"https://orcid.org/0000-0003-4424-4691"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Zelikovsky","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073550054","display_name":"Rahul Singh","orcid":"https://orcid.org/0000-0003-3900-4298"},"institutions":[{"id":"https://openalex.org/I71838634","display_name":"San Francisco State University","ror":"https://ror.org/05ykr0121","country_code":"US","type":"education","lineage":["https://openalex.org/I71838634"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rahul Singh","raw_affiliation_strings":["Department of Computer Science, San Francisco State University, San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, San Francisco State University, San Francisco, CA, USA","institution_ids":["https://openalex.org/I71838634"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026513390","display_name":"Walker Gussler","orcid":null},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Walker Gussler","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027520347","display_name":"Zoya Dimitrova","orcid":null},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zoya Dimitrova","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108272388","display_name":"Sergey Knyazev","orcid":null},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey Knyazev","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008135101","display_name":"Igor Mandric","orcid":"https://orcid.org/0000-0003-4362-5169"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Igor Mandric","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072332372","display_name":"Sumathi Ramachandran","orcid":"https://orcid.org/0000-0001-6359-5003"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sumathi Ramachandran","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018798814","display_name":"David S. Campo","orcid":"https://orcid.org/0000-0002-8970-3436"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Campo","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071558858","display_name":"Deeptanshu Jha","orcid":null},"institutions":[{"id":"https://openalex.org/I71838634","display_name":"San Francisco State University","ror":"https://ror.org/05ykr0121","country_code":"US","type":"education","lineage":["https://openalex.org/I71838634"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deeptanshu Jha","raw_affiliation_strings":["Department of Computer Science, San Francisco State University, San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, San Francisco State University, San Francisco, CA, USA","institution_ids":["https://openalex.org/I71838634"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021009981","display_name":"Leonid Bunimovich","orcid":"https://orcid.org/0000-0003-1261-466X"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonid Bunimovich","raw_affiliation_strings":["School of Mathematics, Georgia Institute of Technology, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"School of Mathematics, Georgia Institute of Technology, Atlanta, GA, USA","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071138946","display_name":"Elizabeth Costenbader","orcid":"https://orcid.org/0000-0002-5104-7672"},"institutions":[{"id":"https://openalex.org/I1290866511","display_name":"Family Health International 360","ror":"https://ror.org/007kp6q87","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1290866511"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth Costenbader","raw_affiliation_strings":["FHI 360, Durham, NC, USA"],"affiliations":[{"raw_affiliation_string":"FHI 360, Durham, NC, USA","institution_ids":["https://openalex.org/I1290866511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062355107","display_name":"Connie J. Sexton","orcid":null},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Connie Sexton","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","Division of Global HIV and TB, Centers for Disease Control and Prevention, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]},{"raw_affiliation_string":"Division of Global HIV and TB, Centers for Disease Control and Prevention, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039633638","display_name":"Siobh\u00e1n O\u2019Connor","orcid":"https://orcid.org/0000-0001-7218-3270"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siobhan O\u2019Connor","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","Division of HIV/AIDS Prevention, Centers for Disease Control and Prevention, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]},{"raw_affiliation_string":"Division of HIV/AIDS Prevention, Centers for Disease Control and Prevention, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025006462","display_name":"Guoliang Xia","orcid":"https://orcid.org/0000-0003-3674-0142"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guo-Liang Xia","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085435304","display_name":"Yury Khudyakov","orcid":null},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yury Khudyakov","raw_affiliation_strings":["Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA","institution_ids":["https://openalex.org/I1289490764"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5052456631"],"corresponding_institution_ids":["https://openalex.org/I1289490764","https://openalex.org/I181565077"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.3367,"has_fulltext":true,"cited_by_count":83,"citation_normalized_percentile":{"value":0.95288612,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"34","issue":"1","first_page":"163","last_page":"170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/viral-quasispecies","display_name":"Viral quasispecies","score":0.9411790370941162},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6857606172561646},{"id":"https://openalex.org/keywords/transmission","display_name":"Transmission (telecommunications)","score":0.6795650720596313},{"id":"https://openalex.org/keywords/viral-evolution","display_name":"Viral evolution","score":0.5028571486473083},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4729825258255005},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4549349248409271},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.43812328577041626},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4293714165687561},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40468066930770874},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3206663131713867},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3181077241897583},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.23163560032844543},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.22486993670463562},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21205464005470276},{"id":"https://openalex.org/keywords/hepatitis-c-virus","display_name":"Hepatitis C virus","score":0.21133559942245483},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12150225043296814}],"concepts":[{"id":"https://openalex.org/C14500911","wikidata":"https://www.wikidata.org/wiki/Q3413375","display_name":"Viral quasispecies","level":4,"score":0.9411790370941162},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6857606172561646},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.6795650720596313},{"id":"https://openalex.org/C8769409","wikidata":"https://www.wikidata.org/wiki/Q2066554","display_name":"Viral evolution","level":4,"score":0.5028571486473083},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4729825258255005},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4549349248409271},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.43812328577041626},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4293714165687561},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40468066930770874},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3206663131713867},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3181077241897583},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23163560032844543},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.22486993670463562},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21205464005470276},{"id":"https://openalex.org/C2776408679","wikidata":"https://www.wikidata.org/wiki/Q708693","display_name":"Hepatitis C virus","level":3,"score":0.21133559942245483},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12150225043296814},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000074704","descriptor_name":"Quasispecies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000074704","descriptor_name":"Quasispecies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000074704","descriptor_name":"Quasispecies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004196","descriptor_name":"Disease Outbreaks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004196","descriptor_name":"Disease Outbreaks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004196","descriptor_name":"Disease Outbreaks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btx402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx402","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/163/25113518/btx402.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29304222","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29304222","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5355435","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6355096","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6355096","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6355096","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx402","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/163/25113518/btx402.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2193848297","display_name":null,"funder_award_id":"1564899 and 16119110","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2383008061","display_name":null,"funder_award_id":"1564899","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4550595423","display_name":null,"funder_award_id":"16119110","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7908228807","display_name":null,"funder_award_id":"Molecular","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2638023010.pdf","grobid_xml":"https://content.openalex.org/works/W2638023010.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W233146336","https://openalex.org/W1894011641","https://openalex.org/W1971166930","https://openalex.org/W1980030331","https://openalex.org/W1987236914","https://openalex.org/W2006191120","https://openalex.org/W2026721694","https://openalex.org/W2041076979","https://openalex.org/W2049397125","https://openalex.org/W2055154062","https://openalex.org/W2055298722","https://openalex.org/W2059041686","https://openalex.org/W2060919531","https://openalex.org/W2072240081","https://openalex.org/W2073918065","https://openalex.org/W2080723129","https://openalex.org/W2096420865","https://openalex.org/W2112400707","https://openalex.org/W2113434524","https://openalex.org/W2115725149","https://openalex.org/W2116623092","https://openalex.org/W2120232409","https://openalex.org/W2121942252","https://openalex.org/W2123716777","https://openalex.org/W2129560802","https://openalex.org/W2133979592","https://openalex.org/W2137223572","https://openalex.org/W2140885215","https://openalex.org/W2149310596","https://openalex.org/W2149445861","https://openalex.org/W2157053750","https://openalex.org/W2166111443","https://openalex.org/W2280931876","https://openalex.org/W2288266106","https://openalex.org/W2294528210","https://openalex.org/W2318310546","https://openalex.org/W2556659231","https://openalex.org/W2773689579","https://openalex.org/W4211158349","https://openalex.org/W4254268221","https://openalex.org/W4319308365","https://openalex.org/W6609023313","https://openalex.org/W6639270328","https://openalex.org/W6676705235","https://openalex.org/W6679004652","https://openalex.org/W6680585397","https://openalex.org/W6684165048","https://openalex.org/W6695196095"],"related_works":["https://openalex.org/W2003574450","https://openalex.org/W4212841392","https://openalex.org/W4253376477","https://openalex.org/W2059132547","https://openalex.org/W1996824979","https://openalex.org/W2073918065","https://openalex.org/W102592854","https://openalex.org/W2974674658","https://openalex.org/W2120389910","https://openalex.org/W2120638695"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
