{"id":"https://openalex.org/W2621657487","doi":"https://doi.org/10.1093/bioinformatics/btx366","title":"runBNG: a software package for BioNano genomic analysis on the command line","display_name":"runBNG: a software package for BioNano genomic analysis on the command line","publication_year":2017,"publication_date":"2017-06-06","ids":{"openalex":"https://openalex.org/W2621657487","doi":"https://doi.org/10.1093/bioinformatics/btx366","mag":"2621657487","pmid":"https://pubmed.ncbi.nlm.nih.gov/28605539"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx366","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx366","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://admin.research-repository.uwa.edu.au/en/publications/3b975d4b-f03b-4d9a-a8e3-4e38c2f3e238","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088376217","display_name":"Yuxuan Yuan","orcid":"https://orcid.org/0000-0003-0741-4196"},"institutions":[{"id":"https://openalex.org/I177877127","display_name":"University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yuxuan Yuan","raw_affiliation_strings":["School of Biological Sciences, University of Western Australia, Perth, WA, Australia"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Western Australia, Perth, WA, Australia","institution_ids":["https://openalex.org/I177877127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030212578","display_name":"Philipp E. Bayer","orcid":"https://orcid.org/0000-0001-8530-3067"},"institutions":[{"id":"https://openalex.org/I177877127","display_name":"University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Philipp E Bayer","raw_affiliation_strings":["School of Biological Sciences, University of Western Australia, Perth, WA, Australia"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Western Australia, Perth, WA, Australia","institution_ids":["https://openalex.org/I177877127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078443271","display_name":"HueyTyng Lee","orcid":"https://orcid.org/0000-0001-8561-3161"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I4210138055","display_name":"Agriculture and Food","ror":"https://ror.org/03n17ds51","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210138055","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I177877127","display_name":"University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Huey-Tyng Lee","raw_affiliation_strings":["School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD, Australia","School of Biological Sciences, University of Western Australia, Perth, WA, Australia"],"affiliations":[{"raw_affiliation_string":"School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I4210138055"]},{"raw_affiliation_string":"School of Biological Sciences, University of Western Australia, Perth, WA, Australia","institution_ids":["https://openalex.org/I177877127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016277624","display_name":"David Edwards","orcid":"https://orcid.org/0000-0001-7599-6760"},"institutions":[{"id":"https://openalex.org/I177877127","display_name":"University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"David Edwards","raw_affiliation_strings":["School of Biological Sciences, University of Western Australia, Perth, WA, Australia"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Western Australia, Perth, WA, Australia","institution_ids":["https://openalex.org/I177877127"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5016277624"],"corresponding_institution_ids":["https://openalex.org/I177877127"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6736,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.68797754,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"33","issue":"19","first_page":"3107","last_page":"3109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6654239296913147},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6389833688735962},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.514721691608429},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4782513678073883},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.4282294511795044},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08995422720909119}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6654239296913147},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6389833688735962},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.514721691608429},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4782513678073883},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.4282294511795044},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08995422720909119},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btx366","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx366","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28605539","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28605539","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/3b975d4b-f03b-4d9a-a8e3-4e38c2f3e238","is_oa":true,"landing_page_url":"https://admin.research-repository.uwa.edu.au/en/publications/3b975d4b-f03b-4d9a-a8e3-4e38c2f3e238","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Yuan, Y, Bayer, P E, Lee, H-T & Edwards, D 2017, 'runBNG : a software package for BioNano genomic analysis on the command line', Bioinformatics, vol. 33, no. 19, pp. 3107-3109. https://doi.org/10.1093/bioinformatics/btx366","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/3b975d4b-f03b-4d9a-a8e3-4e38c2f3e238","is_oa":true,"landing_page_url":"https://research-repository.uwa.edu.au/en/publications/3b975d4b-f03b-4d9a-a8e3-4e38c2f3e238","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Yuan , Y , Bayer , P E , Lee , H-T &amp; Edwards , D 2017 , ' runBNG : a software package for BioNano genomic analysis on the command line ' , Bioinformatics , vol. 33 , no. 19 , pp. 3107-3109 . https://doi.org/10.1093/bioinformatics/btx366","raw_type":"article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:692492","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:openaire/3b975d4b-f03b-4d9a-a8e3-4e38c2f3e238","is_oa":true,"landing_page_url":"https://admin.research-repository.uwa.edu.au/en/publications/3b975d4b-f03b-4d9a-a8e3-4e38c2f3e238","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Yuan, Y, Bayer, P E, Lee, H-T & Edwards, D 2017, 'runBNG : a software package for BioNano genomic analysis on the command line', Bioinformatics, vol. 33, no. 19, pp. 3107-3109. https://doi.org/10.1093/bioinformatics/btx366","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1924950498","https://openalex.org/W2012012446","https://openalex.org/W2013063066","https://openalex.org/W2134416020","https://openalex.org/W2137813637","https://openalex.org/W2141262285","https://openalex.org/W2167155938","https://openalex.org/W2260583560","https://openalex.org/W2287566020","https://openalex.org/W2345920351","https://openalex.org/W2396849069","https://openalex.org/W2464063823","https://openalex.org/W2509475426","https://openalex.org/W2527708324"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2149263892","https://openalex.org/W4235496431","https://openalex.org/W2155302041","https://openalex.org/W3207560769","https://openalex.org/W1990412843","https://openalex.org/W3042945901"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
