{"id":"https://openalex.org/W2529555647","doi":"https://doi.org/10.1093/bioinformatics/btw633","title":"P3BSseq: parallel processing pipeline software for automatic analysis of bisulfite sequencing data","display_name":"P3BSseq: parallel processing pipeline software for automatic analysis of bisulfite sequencing data","publication_year":2016,"publication_date":"2016-09-30","ids":{"openalex":"https://openalex.org/W2529555647","doi":"https://doi.org/10.1093/bioinformatics/btw633","mag":"2529555647","pmid":"https://pubmed.ncbi.nlm.nih.gov/28172520"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw633","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw633","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/428/25145962/btw633.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/428/25145962/btw633.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021016658","display_name":"Phuc\u2010Loi Luu","orcid":"https://orcid.org/0000-0001-8045-718X"},"institutions":[{"id":"https://openalex.org/I4210152666","display_name":"Max Planck Institute for Molecular Biomedicine","ror":"https://ror.org/040djv263","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210152666"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Phuc-Loi Luu","raw_affiliation_strings":["Computational Biology and Bioinformatics, Max Planck Institute for Molecular Biomedicine, M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Biology and Bioinformatics, Max Planck Institute for Molecular Biomedicine, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210152666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054042948","display_name":"Daniela Gerovska","orcid":"https://orcid.org/0000-0003-0671-4277"},"institutions":[{"id":"https://openalex.org/I4210100188","display_name":"Biogipuzkoa Health Research Institute","ror":"https://ror.org/01a2wsa50","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210100188"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Daniela Gerovska","raw_affiliation_strings":["Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebasti\u00e1n, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebasti\u00e1n, Spain","institution_ids":["https://openalex.org/I4210100188"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068499986","display_name":"Mikel Arrospide-Elgarresta","orcid":"https://orcid.org/0000-0003-1850-1666"},"institutions":[{"id":"https://openalex.org/I4210100188","display_name":"Biogipuzkoa Health Research Institute","ror":"https://ror.org/01a2wsa50","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210100188"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mikel Arrospide-Elgarresta","raw_affiliation_strings":["Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebasti\u00e1n, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebasti\u00e1n, Spain","institution_ids":["https://openalex.org/I4210100188"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063851269","display_name":"Sugoi Retegi-Carri\u00f3n","orcid":"https://orcid.org/0000-0002-0320-133X"},"institutions":[{"id":"https://openalex.org/I4210100188","display_name":"Biogipuzkoa Health Research Institute","ror":"https://ror.org/01a2wsa50","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210100188"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sugoi Retegi-Carri\u00f3n","raw_affiliation_strings":["Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebasti\u00e1n, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebasti\u00e1n, Spain","institution_ids":["https://openalex.org/I4210100188"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078962332","display_name":"Hans R. Sch\u00f6ler","orcid":"https://orcid.org/0000-0003-2643-5136"},"institutions":[{"id":"https://openalex.org/I4210152666","display_name":"Max Planck Institute for Molecular Biomedicine","ror":"https://ror.org/040djv263","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210152666"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans R Sch\u00f6ler","raw_affiliation_strings":["Department of Cell and Developmental Biology, Max Planck Institute for Molecular Biomedicine, M\u00fcnster, Germany","Medical Faculty, University of M\u00fcnster, M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Developmental Biology, Max Planck Institute for Molecular Biomedicine, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210152666"]},{"raw_affiliation_string":"Medical Faculty, University of M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048193070","display_name":"Marcos J. Ara\u00fazo\u2010Bravo","orcid":"https://orcid.org/0000-0002-3264-464X"},"institutions":[{"id":"https://openalex.org/I4210100188","display_name":"Biogipuzkoa Health Research Institute","ror":"https://ror.org/01a2wsa50","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210100188"]},{"id":"https://openalex.org/I110594554","display_name":"Ikerbasque","ror":"https://ror.org/01cc3fy72","country_code":"ES","type":"other","lineage":["https://openalex.org/I110594554"]},{"id":"https://openalex.org/I4210152666","display_name":"Max Planck Institute for Molecular Biomedicine","ror":"https://ror.org/040djv263","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210152666"]}],"countries":["DE","ES"],"is_corresponding":true,"raw_author_name":"Marcos J Ara\u00fazo-Bravo","raw_affiliation_strings":["Computational Biology and Bioinformatics, Max Planck Institute for Molecular Biomedicine, M\u00fcnster, Germany","Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebasti\u00e1n, Spain","IKERBASQUE, Basque Foundation for Science, Bilbao, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Biology and Bioinformatics, Max Planck Institute for Molecular Biomedicine, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210152666"]},{"raw_affiliation_string":"Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebasti\u00e1n, Spain","institution_ids":["https://openalex.org/I4210100188"]},{"raw_affiliation_string":"IKERBASQUE, Basque Foundation for Science, Bilbao, Spain","institution_ids":["https://openalex.org/I110594554"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5048193070"],"corresponding_institution_ids":["https://openalex.org/I110594554","https://openalex.org/I4210100188","https://openalex.org/I4210152666"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6673,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.84535125,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"33","issue":"3","first_page":"428","last_page":"431"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9684000015258789,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7370029091835022},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7158635854721069},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5965120792388916},{"id":"https://openalex.org/keywords/bisulfite","display_name":"Bisulfite","score":0.5925528407096863},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3206721246242523},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2681843936443329},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12463721632957458},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0836801528930664},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.08338764309883118}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7370029091835022},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7158635854721069},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5965120792388916},{"id":"https://openalex.org/C2775959680","wikidata":"https://www.wikidata.org/wiki/Q2718222","display_name":"Bisulfite","level":5,"score":0.5925528407096863},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3206721246242523},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2681843936443329},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12463721632957458},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0836801528930664},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.08338764309883118},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw633","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw633","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/428/25145962/btw633.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28172520","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28172520","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:edoc.mpg.de:744127","is_oa":false,"landing_page_url":"http://edoc.mpg.de/744127","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, v.33, 428-431 (2017)","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw633","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw633","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/3/428/25145962/btw633.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2529555647.pdf","grobid_xml":"https://content.openalex.org/works/W2529555647.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1987557775","https://openalex.org/W2007139340","https://openalex.org/W2019229253","https://openalex.org/W2030380828","https://openalex.org/W2036897871","https://openalex.org/W2051273886","https://openalex.org/W2059099579","https://openalex.org/W2067130606","https://openalex.org/W2069796345","https://openalex.org/W2077562677","https://openalex.org/W2097205777","https://openalex.org/W2101563246","https://openalex.org/W2102838558","https://openalex.org/W2103810926","https://openalex.org/W2106340111","https://openalex.org/W2106889224","https://openalex.org/W2108234281","https://openalex.org/W2128793361","https://openalex.org/W2131374955","https://openalex.org/W2133229506","https://openalex.org/W2137586531","https://openalex.org/W2139437267","https://openalex.org/W2146728635","https://openalex.org/W2149507559","https://openalex.org/W2165446840"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2054484492","https://openalex.org/W2905022623","https://openalex.org/W2889807142","https://openalex.org/W1990950482","https://openalex.org/W2811448415","https://openalex.org/W2619376220","https://openalex.org/W2953262169","https://openalex.org/W3008042233","https://openalex.org/W1561039709"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
