{"id":"https://openalex.org/W2521310534","doi":"https://doi.org/10.1093/bioinformatics/btw602","title":"LongISLND: <i>in silico</i> sequencing of lengthy and noisy datatypes","display_name":"LongISLND: <i>in silico</i> sequencing of lengthy and noisy datatypes","publication_year":2016,"publication_date":"2016-09-25","ids":{"openalex":"https://openalex.org/W2521310534","doi":"https://doi.org/10.1093/bioinformatics/btw602","mag":"2521310534","pmid":"https://pubmed.ncbi.nlm.nih.gov/27667791"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/24/3829/16921335/btw602.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/24/3829/16921335/btw602.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018144410","display_name":"Bayo Lau","orcid":"https://orcid.org/0000-0001-7243-9221"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bayo Lau","raw_affiliation_strings":["1Roche Sequencing Solutions, Belmont, CA 94002, USA"],"affiliations":[{"raw_affiliation_string":"1Roche Sequencing Solutions, Belmont, CA 94002, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005444139","display_name":"Marghoob Mohiyuddin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marghoob Mohiyuddin","raw_affiliation_strings":["1Roche Sequencing Solutions, Belmont, CA 94002, USA"],"affiliations":[{"raw_affiliation_string":"1Roche Sequencing Solutions, Belmont, CA 94002, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014201647","display_name":"John C. Mu","orcid":"https://orcid.org/0000-0002-9666-8528"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John C. Mu","raw_affiliation_strings":["1Roche Sequencing Solutions, Belmont, CA 94002, USA"],"affiliations":[{"raw_affiliation_string":"1Roche Sequencing Solutions, Belmont, CA 94002, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057577882","display_name":"Li Tai Fang","orcid":"https://orcid.org/0000-0003-3201-5162"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li Tai Fang","raw_affiliation_strings":["1Roche Sequencing Solutions, Belmont, CA 94002, USA"],"affiliations":[{"raw_affiliation_string":"1Roche Sequencing Solutions, Belmont, CA 94002, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046286565","display_name":"Narges Bani Asadi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Narges Bani Asadi","raw_affiliation_strings":["1Roche Sequencing Solutions, Belmont, CA 94002, USA"],"affiliations":[{"raw_affiliation_string":"1Roche Sequencing Solutions, Belmont, CA 94002, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035586632","display_name":"Carolina Dallett","orcid":"https://orcid.org/0000-0002-6034-1099"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carolina Dallett","raw_affiliation_strings":["2Roche Sequencing Solutions, Pleasanton, CA 94588, USA"],"affiliations":[{"raw_affiliation_string":"2Roche Sequencing Solutions, Pleasanton, CA 94588, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058892069","display_name":"Hugo Y. K. Lam","orcid":"https://orcid.org/0000-0002-0564-6105"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Hugo Y. K. Lam","raw_affiliation_strings":["1Roche Sequencing Solutions, Belmont, CA 94002, USA"],"affiliations":[{"raw_affiliation_string":"1Roche Sequencing Solutions, Belmont, CA 94002, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5058892069"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7405,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.85130762,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"32","issue":"24","first_page":"3829","last_page":"3832"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8006306886672974},{"id":"https://openalex.org/keywords/emulation","display_name":"Emulation","score":0.7126212120056152},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6518735885620117},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6113495826721191},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.46062177419662476},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3843284249305725},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.383794903755188},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33858931064605713},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10774567723274231}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8006306886672974},{"id":"https://openalex.org/C149810388","wikidata":"https://www.wikidata.org/wiki/Q5374873","display_name":"Emulation","level":2,"score":0.7126212120056152},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6518735885620117},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6113495826721191},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.46062177419662476},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3843284249305725},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.383794903755188},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33858931064605713},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10774567723274231},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btw602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/24/3829/16921335/btw602.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27667791","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27667791","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/24/3829","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/24/3829","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5167071","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5167071","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/24/3829/16921335/btw602.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2521310534.pdf","grobid_xml":"https://content.openalex.org/works/W2521310534.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1519765314","https://openalex.org/W1579534339","https://openalex.org/W1596062789","https://openalex.org/W1791377616","https://openalex.org/W1971584645","https://openalex.org/W1983403167","https://openalex.org/W2007772656","https://openalex.org/W2029297547","https://openalex.org/W2120561538","https://openalex.org/W2132341951","https://openalex.org/W2137759177","https://openalex.org/W2141581393","https://openalex.org/W2141978199","https://openalex.org/W2165765309","https://openalex.org/W2165799971","https://openalex.org/W2194172909","https://openalex.org/W2323851578","https://openalex.org/W2337261418"],"related_works":["https://openalex.org/W2154523322","https://openalex.org/W2083200807","https://openalex.org/W2364195017","https://openalex.org/W2049983405","https://openalex.org/W2355430452","https://openalex.org/W1603137082","https://openalex.org/W2392315374","https://openalex.org/W1951195060","https://openalex.org/W2351776620","https://openalex.org/W2352195574"],"abstract_inverted_index":{"LongISLND":[0],"is":[1],"implemented":[2],"in":[3],"Java":[4],"and":[5],"available":[6,15],"at":[7,16],"http://bioinform.github.io/longislnd":[8],"CONTACT:":[9],"hugo.lam@roche.comSupplementary":[10],"information:":[11],"Supplementary":[12],"data":[13],"are":[14],"Bioinformatics":[17],"online.":[18]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-09-30T00:00:00"}
