{"id":"https://openalex.org/W2485621561","doi":"https://doi.org/10.1093/bioinformatics/btw491","title":"ReactPRED: a tool to predict and analyze biochemical reactions","display_name":"ReactPRED: a tool to predict and analyze biochemical reactions","publication_year":2016,"publication_date":"2016-08-02","ids":{"openalex":"https://openalex.org/W2485621561","doi":"https://doi.org/10.1093/bioinformatics/btw491","mag":"2485621561","pmid":"https://pubmed.ncbi.nlm.nih.gov/27485447"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3522/16920768/btw491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3522/16920768/btw491.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109331919","display_name":"T. Sivakumar","orcid":"https://orcid.org/0009-0008-1227-7767"},"institutions":[{"id":"https://openalex.org/I4210139030","display_name":"Samsung (India)","ror":"https://ror.org/04cpx2569","country_code":"IN","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210139030"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Tadi Venkata Sivakumar","raw_affiliation_strings":["1Bioinformatics Lab, Samsung Advanced Institute of Technology, Bangalore 560037, India"],"affiliations":[{"raw_affiliation_string":"1Bioinformatics Lab, Samsung Advanced Institute of Technology, Bangalore 560037, India","institution_ids":["https://openalex.org/I4210139030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064039422","display_name":"Varun Giri","orcid":"https://orcid.org/0000-0001-6055-6324"},"institutions":[{"id":"https://openalex.org/I4210139030","display_name":"Samsung (India)","ror":"https://ror.org/04cpx2569","country_code":"IN","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210139030"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Varun Giri","raw_affiliation_strings":["1Bioinformatics Lab, Samsung Advanced Institute of Technology, Bangalore 560037, India"],"affiliations":[{"raw_affiliation_string":"1Bioinformatics Lab, Samsung Advanced Institute of Technology, Bangalore 560037, India","institution_ids":["https://openalex.org/I4210139030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088406723","display_name":"Jin Hwan Park","orcid":"https://orcid.org/0000-0001-8384-7909"},"institutions":[{"id":"https://openalex.org/I2250650973","display_name":"Samsung (South Korea)","ror":"https://ror.org/04w3jy968","country_code":"KR","type":"company","lineage":["https://openalex.org/I2250650973"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jin Hwan Park","raw_affiliation_strings":["2Biomaterials Lab, Materials Center, Samsung Advanced Institute of Technology, Gyeonggi-Do 443803, Korea"],"affiliations":[{"raw_affiliation_string":"2Biomaterials Lab, Materials Center, Samsung Advanced Institute of Technology, Gyeonggi-Do 443803, Korea","institution_ids":["https://openalex.org/I2250650973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047156899","display_name":"Tae Yong Kim","orcid":"https://orcid.org/0000-0003-4982-4441"},"institutions":[{"id":"https://openalex.org/I2250650973","display_name":"Samsung (South Korea)","ror":"https://ror.org/04w3jy968","country_code":"KR","type":"company","lineage":["https://openalex.org/I2250650973"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Tae Yong Kim","raw_affiliation_strings":["2Biomaterials Lab, Materials Center, Samsung Advanced Institute of Technology, Gyeonggi-Do 443803, Korea"],"affiliations":[{"raw_affiliation_string":"2Biomaterials Lab, Materials Center, Samsung Advanced Institute of Technology, Gyeonggi-Do 443803, Korea","institution_ids":["https://openalex.org/I2250650973"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028699541","display_name":"Anirban Bhaduri","orcid":"https://orcid.org/0000-0002-7787-3550"},"institutions":[{"id":"https://openalex.org/I4210139030","display_name":"Samsung (India)","ror":"https://ror.org/04cpx2569","country_code":"IN","type":"company","lineage":["https://openalex.org/I2250650973","https://openalex.org/I4210139030"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Anirban Bhaduri","raw_affiliation_strings":["1Bioinformatics Lab, Samsung Advanced Institute of Technology, Bangalore 560037, India"],"affiliations":[{"raw_affiliation_string":"1Bioinformatics Lab, Samsung Advanced Institute of Technology, Bangalore 560037, India","institution_ids":["https://openalex.org/I4210139030"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5028699541","https://openalex.org/A5047156899"],"corresponding_institution_ids":["https://openalex.org/I2250650973","https://openalex.org/I4210139030"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.0008,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.86635033,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"32","issue":"22","first_page":"3522","last_page":"3524"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7665280103683472},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6336057782173157},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6215386390686035},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5232619047164917},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.44852226972579956},{"id":"https://openalex.org/keywords/rule-based-system","display_name":"Rule-based system","score":0.4324128031730652},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4313654601573944},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.41183072328567505},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23400384187698364},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22829273343086243},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.08806943893432617}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7665280103683472},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6336057782173157},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6215386390686035},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5232619047164917},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.44852226972579956},{"id":"https://openalex.org/C149271511","wikidata":"https://www.wikidata.org/wiki/Q1417149","display_name":"Rule-based system","level":2,"score":0.4324128031730652},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4313654601573944},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.41183072328567505},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23400384187698364},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22829273343086243},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.08806943893432617},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001671","descriptor_name":"Biochemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001671","descriptor_name":"Biochemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001671","descriptor_name":"Biochemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btw491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3522/16920768/btw491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27485447","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27485447","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/22/3522/16920768/btw491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332195","display_name":"Samsung","ror":"https://ror.org/04w3jy968"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2485621561.pdf","grobid_xml":"https://content.openalex.org/works/W2485621561.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1524559426","https://openalex.org/W1964232618","https://openalex.org/W1997996256","https://openalex.org/W2021688572","https://openalex.org/W2042067428","https://openalex.org/W2047439324","https://openalex.org/W2071302369","https://openalex.org/W2086702971","https://openalex.org/W2098889731","https://openalex.org/W2101548835","https://openalex.org/W2113580085","https://openalex.org/W2125122419","https://openalex.org/W2128338897","https://openalex.org/W2128601422","https://openalex.org/W2162082704","https://openalex.org/W2162586071","https://openalex.org/W2163898101","https://openalex.org/W2174759676","https://openalex.org/W2395455295","https://openalex.org/W4230770774"],"related_works":["https://openalex.org/W2022968056","https://openalex.org/W3180179400","https://openalex.org/W2118366689","https://openalex.org/W2154998455","https://openalex.org/W2116888309","https://openalex.org/W1649706580","https://openalex.org/W2477652530","https://openalex.org/W2039055059","https://openalex.org/W3195608031","https://openalex.org/W2381088774"],"abstract_inverted_index":{"ReactPRED":[0],"is":[1],"available":[2,13],"at:":[3],"https://sourceforge.net/projects/reactpred/":[4],"CONTACT:":[5],"anirban.b@samsung.com":[6],"or":[7],"ty76.kim@samsung.comSupplementary":[8],"information:":[9],"Supplementary":[10],"data":[11],"are":[12],"at":[14],"Bioinformatics":[15],"online.":[16]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
