{"id":"https://openalex.org/W2511039129","doi":"https://doi.org/10.1093/bioinformatics/btw423","title":"Detecting horizontal gene transfer by mapping sequencing reads across species boundaries","display_name":"Detecting horizontal gene transfer by mapping sequencing reads across species boundaries","publication_year":2016,"publication_date":"2016-08-29","ids":{"openalex":"https://openalex.org/W2511039129","doi":"https://doi.org/10.1093/bioinformatics/btw423","mag":"2511039129","pmid":"https://pubmed.ncbi.nlm.nih.gov/27587679"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw423","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw423","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i595/24150863/btw423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i595/24150863/btw423.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033795944","display_name":"Kathrin Trappe","orcid":"https://orcid.org/0000-0002-2887-1575"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kathrin Trappe","raw_affiliation_strings":["Robert Koch Institute, Research Group Bioinformatics (NG4), 13353 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Robert Koch Institute, Research Group Bioinformatics (NG4), 13353 Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067570776","display_name":"Tobias Marschall","orcid":"https://orcid.org/0000-0002-9376-1030"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Marschall","raw_affiliation_strings":["Center for Bioinformatics, Saarland University, and Max Planck Institute for Informatics, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Saarland University, and Max Planck Institute for Informatics, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005996110","display_name":"Bernhard Y. Renard","orcid":"https://orcid.org/0000-0003-4589-9809"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Bernhard Y. Renard","raw_affiliation_strings":["Robert Koch Institute, Research Group Bioinformatics (NG4), 13353 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Robert Koch Institute, Research Group Bioinformatics (NG4), 13353 Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005996110"],"corresponding_institution_ids":["https://openalex.org/I24359323"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5688,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.83732551,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"32","issue":"17","first_page":"i595","last_page":"i604"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.8450726270675659},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6322377920150757},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.626270592212677},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5515706539154053},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5497182607650757},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5218954682350159},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4994959831237793},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3982953727245331},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2920772433280945}],"concepts":[{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.8450726270675659},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6322377920150757},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.626270592212677},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5515706539154053},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5497182607650757},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5218954682350159},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4994959831237793},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3982953727245331},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2920772433280945},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btw423","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw423","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i595/24150863/btw423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27587679","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27587679","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escidoc.org:escidoc:2351390","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-002B-8674-0","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/17/i595","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/17/i595","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.mpg.de:item_2351390","is_oa":false,"landing_page_url":"https://hdl.handle.net/11858/00-001M-0000-002B-8674-0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ECCB 2016","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw423","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw423","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/i595/24150863/btw423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6600000262260437,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G4129017060","display_name":null,"funder_award_id":"RE3474/2-1","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"}],"funders":[{"id":"https://openalex.org/F4320308022","display_name":"California Department of Fish and Game","ror":"https://ror.org/02v6w2r95"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2511039129.pdf","grobid_xml":"https://content.openalex.org/works/W2511039129.grobid-xml"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W26356079","https://openalex.org/W123030229","https://openalex.org/W1504625555","https://openalex.org/W1590308370","https://openalex.org/W1599377382","https://openalex.org/W1882572081","https://openalex.org/W1911391407","https://openalex.org/W1998787456","https://openalex.org/W2002438422","https://openalex.org/W2008138375","https://openalex.org/W2008568044","https://openalex.org/W2019385975","https://openalex.org/W2024528333","https://openalex.org/W2031463179","https://openalex.org/W2038639577","https://openalex.org/W2042312218","https://openalex.org/W2042838021","https://openalex.org/W2046601740","https://openalex.org/W2049997041","https://openalex.org/W2058920498","https://openalex.org/W2065817684","https://openalex.org/W2067643279","https://openalex.org/W2072098717","https://openalex.org/W2073519406","https://openalex.org/W2078447778","https://openalex.org/W2083870688","https://openalex.org/W2085454969","https://openalex.org/W2089310071","https://openalex.org/W2092203068","https://openalex.org/W2093494326","https://openalex.org/W2103441770","https://openalex.org/W2104046507","https://openalex.org/W2105871221","https://openalex.org/W2107387420","https://openalex.org/W2107830007","https://openalex.org/W2108228587","https://openalex.org/W2108923274","https://openalex.org/W2110667602","https://openalex.org/W2113068511","https://openalex.org/W2117530634","https://openalex.org/W2118471291","https://openalex.org/W2120358246","https://openalex.org/W2120902911","https://openalex.org/W2121031804","https://openalex.org/W2121712934","https://openalex.org/W2121713277","https://openalex.org/W2127768708","https://openalex.org/W2129714591","https://openalex.org/W2129933858","https://openalex.org/W2131088968","https://openalex.org/W2132318428","https://openalex.org/W2135144484","https://openalex.org/W2138952930","https://openalex.org/W2139993758","https://openalex.org/W2140366683","https://openalex.org/W2142657063","https://openalex.org/W2143395586","https://openalex.org/W2144632955","https://openalex.org/W2146005104","https://openalex.org/W2149992227","https://openalex.org/W2150503252","https://openalex.org/W2150506261","https://openalex.org/W2154397429","https://openalex.org/W2159640103","https://openalex.org/W2159817785","https://openalex.org/W2159954944","https://openalex.org/W2160969485","https://openalex.org/W2163549019","https://openalex.org/W2164558813","https://openalex.org/W2167111563","https://openalex.org/W2168440186","https://openalex.org/W2332582324","https://openalex.org/W4212988433","https://openalex.org/W6629968481","https://openalex.org/W6665211404"],"related_works":["https://openalex.org/W2264917134","https://openalex.org/W4249861864","https://openalex.org/W2505308311","https://openalex.org/W2972620994","https://openalex.org/W3149326312","https://openalex.org/W4288427168","https://openalex.org/W2043760664","https://openalex.org/W2409815428","https://openalex.org/W3016599224","https://openalex.org/W2317816538"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}