{"id":"https://openalex.org/W2467352723","doi":"https://doi.org/10.1093/bioinformatics/btw377","title":"Accurate <i>in silico</i> prediction of species-specific methylation sites based on information gain feature optimization","display_name":"Accurate <i>in silico</i> prediction of species-specific methylation sites based on information gain feature optimization","publication_year":2016,"publication_date":"2016-06-20","ids":{"openalex":"https://openalex.org/W2467352723","doi":"https://doi.org/10.1093/bioinformatics/btw377","mag":"2467352723","pmid":"https://pubmed.ncbi.nlm.nih.gov/27354692"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw377","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/20/3107/25040445/btw377.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/20/3107/25040445/btw377.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006582630","display_name":"Pingping Wen","orcid":"https://orcid.org/0000-0002-5499-1183"},"institutions":[{"id":"https://openalex.org/I141649914","display_name":"Nanchang University","ror":"https://ror.org/042v6xz23","country_code":"CN","type":"education","lineage":["https://openalex.org/I141649914"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping-Ping Wen","raw_affiliation_strings":["1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China","institution_ids":["https://openalex.org/I141649914"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089248160","display_name":"Shaoping Shi","orcid":"https://orcid.org/0000-0003-0045-868X"},"institutions":[{"id":"https://openalex.org/I141649914","display_name":"Nanchang University","ror":"https://ror.org/042v6xz23","country_code":"CN","type":"education","lineage":["https://openalex.org/I141649914"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shao-Ping Shi","raw_affiliation_strings":["1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China","institution_ids":["https://openalex.org/I141649914"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008581924","display_name":"Haodong Xu","orcid":"https://orcid.org/0000-0003-2086-3893"},"institutions":[{"id":"https://openalex.org/I141649914","display_name":"Nanchang University","ror":"https://ror.org/042v6xz23","country_code":"CN","type":"education","lineage":["https://openalex.org/I141649914"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao-Dong Xu","raw_affiliation_strings":["1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China","institution_ids":["https://openalex.org/I141649914"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100385952","display_name":"Lina Wang","orcid":"https://orcid.org/0000-0003-1457-0015"},"institutions":[{"id":"https://openalex.org/I141649914","display_name":"Nanchang University","ror":"https://ror.org/042v6xz23","country_code":"CN","type":"education","lineage":["https://openalex.org/I141649914"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li-Na Wang","raw_affiliation_strings":["1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China","institution_ids":["https://openalex.org/I141649914"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101844356","display_name":"Jian\u2010Ding Qiu","orcid":"https://orcid.org/0000-0002-6793-9499"},"institutions":[{"id":"https://openalex.org/I4210164522","display_name":"Pingxiang University","ror":"https://ror.org/05j5de504","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210164522"]},{"id":"https://openalex.org/I141649914","display_name":"Nanchang University","ror":"https://ror.org/042v6xz23","country_code":"CN","type":"education","lineage":["https://openalex.org/I141649914"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian-Ding Qiu","raw_affiliation_strings":["1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China","2 Department of Materials and Chemical Engineering, Pingxiang University, Pingxiang 337055, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemistry, Department of Mathematics, Nanchang University, Nanchang 330031, China","institution_ids":["https://openalex.org/I141649914"]},{"raw_affiliation_string":"2 Department of Materials and Chemical Engineering, Pingxiang University, Pingxiang 337055, China","institution_ids":["https://openalex.org/I4210164522"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101844356"],"corresponding_institution_ids":["https://openalex.org/I141649914","https://openalex.org/I4210164522"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.0019,"has_fulltext":false,"cited_by_count":72,"citation_normalized_percentile":{"value":0.95763089,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"32","issue":"20","first_page":"3107","last_page":"3115"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9610999822616577,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.7105572819709778},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6723966002464294},{"id":"https://openalex.org/keywords/protein-methylation","display_name":"Protein methylation","score":0.6105865836143494},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5913897752761841},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.589007556438446},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4809107780456543},{"id":"https://openalex.org/keywords/methyltransferase","display_name":"Methyltransferase","score":0.4552513360977173},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4438880980014801},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40392524003982544},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3687581419944763},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32154011726379395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.214048832654953},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08692377805709839},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08370533585548401}],"concepts":[{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.7105572819709778},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6723966002464294},{"id":"https://openalex.org/C2778178838","wikidata":"https://www.wikidata.org/wiki/Q14876922","display_name":"Protein methylation","level":5,"score":0.6105865836143494},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5913897752761841},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.589007556438446},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4809107780456543},{"id":"https://openalex.org/C91965660","wikidata":"https://www.wikidata.org/wiki/Q415875","display_name":"Methyltransferase","level":4,"score":0.4552513360977173},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4438880980014801},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40392524003982544},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3687581419944763},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32154011726379395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.214048832654953},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08692377805709839},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08370533585548401},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btw377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw377","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/20/3107/25040445/btw377.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27354692","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27354692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/20/3107","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/20/3107","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw377","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/20/3107/25040445/btw377.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334924","display_name":"Program for New Century Excellent Talents in University","ror":"https://ror.org/01mv9t934"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2467352723.pdf","grobid_xml":"https://content.openalex.org/works/W2467352723.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1504478980","https://openalex.org/W1848460039","https://openalex.org/W1964792512","https://openalex.org/W1987743548","https://openalex.org/W1988452475","https://openalex.org/W1995173448","https://openalex.org/W1999118478","https://openalex.org/W2007805002","https://openalex.org/W2009540433","https://openalex.org/W2014731953","https://openalex.org/W2025277638","https://openalex.org/W2043025235","https://openalex.org/W2047750588","https://openalex.org/W2048356293","https://openalex.org/W2048973039","https://openalex.org/W2056605533","https://openalex.org/W2058382760","https://openalex.org/W2071700927","https://openalex.org/W2079056345","https://openalex.org/W2084363170","https://openalex.org/W2092809155","https://openalex.org/W2093572184","https://openalex.org/W2095900655","https://openalex.org/W2103404876","https://openalex.org/W2107892065","https://openalex.org/W2116062594","https://openalex.org/W2116305918","https://openalex.org/W2117399884","https://openalex.org/W2118900351","https://openalex.org/W2121417968","https://openalex.org/W2123226254","https://openalex.org/W2129137060","https://openalex.org/W2135914939","https://openalex.org/W2140354277","https://openalex.org/W2141037299","https://openalex.org/W2141818629","https://openalex.org/W2143210482","https://openalex.org/W2148685096","https://openalex.org/W2150271494","https://openalex.org/W2152339342","https://openalex.org/W2154053567","https://openalex.org/W2156125289","https://openalex.org/W2164260969","https://openalex.org/W2416095812","https://openalex.org/W4236048913","https://openalex.org/W6653812282"],"related_works":["https://openalex.org/W46965905","https://openalex.org/W2089104969","https://openalex.org/W4312019931","https://openalex.org/W3147900171","https://openalex.org/W3172822044","https://openalex.org/W2475490100","https://openalex.org/W2003083382","https://openalex.org/W2054210259","https://openalex.org/W2058382760","https://openalex.org/W4387592349"],"abstract_inverted_index":{"The":[0],"tool":[1],"online":[2],"service":[3],"is":[4],"implemented":[5],"by":[6],"C#":[7],"language":[8],"and":[9],"freely":[10],"available":[11,20],"at":[12,21],"http://bioinfo.ncu.edu.cn/PSSMe.aspx":[13],"CONTACT:":[14],"jdqiu@ncu.edu.cnSupplementary":[15],"information:":[16],"Supplementary":[17],"data":[18],"are":[19],"Bioinformatics":[22],"online.":[23]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":19},{"year":2017,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-07-22T00:00:00"}
