{"id":"https://openalex.org/W1900217900","doi":"https://doi.org/10.1093/bioinformatics/btw310","title":"Exploring the structure and function of temporal networks with dynamic graphlets","display_name":"Exploring the structure and function of temporal networks with dynamic graphlets","publication_year":2016,"publication_date":"2016-06-14","ids":{"openalex":"https://openalex.org/W1900217900","doi":"https://doi.org/10.1093/bioinformatics/btw310","mag":"1900217900","pmid":"https://pubmed.ncbi.nlm.nih.gov/27301405"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/15/2402/9642491/btw310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"erratum","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/15/2402/9642491/btw310.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015668746","display_name":"Yuriy Hulovatyy","orcid":null},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Y. Hulovatyy","raw_affiliation_strings":["Department of Computer Science and Engineering, Interdisciplinary Center for Network Science and Applications, and ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Interdisciplinary Center for Network Science and Applications, and ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111502820","display_name":"Hongyang Chen","orcid":"https://orcid.org/0009-0004-4540-5287"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Chen","raw_affiliation_strings":["Department of Computer Science and Engineering, Interdisciplinary Center for Network Science and Applications, and ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Interdisciplinary Center for Network Science and Applications, and ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042457126","display_name":"Tijana Milenkovi\u0107","orcid":"https://orcid.org/0000-0002-8023-6907"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Milenkovi\u0107","raw_affiliation_strings":["Department of Computer Science and Engineering, Interdisciplinary Center for Network Science and Applications, and ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Interdisciplinary Center for Network Science and Applications, and ECK Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015668746"],"corresponding_institution_ids":["https://openalex.org/I107639228"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.973,"has_fulltext":false,"cited_by_count":84,"citation_normalized_percentile":{"value":0.97346279,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"32","issue":"15","first_page":"2402","last_page":"2402"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6881825923919678},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5762553215026855},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32506510615348816},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11238974332809448}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6881825923919678},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5762553215026855},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32506510615348816},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11238974332809448},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btw310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/15/2402/9642491/btw310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27301405","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27301405","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/15/2402","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/15/2402","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4965637","is_oa":true,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btw310","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/15/2402/9642491/btw310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1900217900.pdf","grobid_xml":"https://content.openalex.org/works/W1900217900.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W16942553","https://openalex.org/W156925849","https://openalex.org/W1686696692","https://openalex.org/W1758345311","https://openalex.org/W1849803292","https://openalex.org/W1875112053","https://openalex.org/W1976196182","https://openalex.org/W1981138861","https://openalex.org/W1991907198","https://openalex.org/W1992382856","https://openalex.org/W1994118090","https://openalex.org/W1995907191","https://openalex.org/W2006038621","https://openalex.org/W2011591780","https://openalex.org/W2027686080","https://openalex.org/W2029792996","https://openalex.org/W2031291897","https://openalex.org/W2049966951","https://openalex.org/W2072678733","https://openalex.org/W2074533336","https://openalex.org/W2084668512","https://openalex.org/W2086639361","https://openalex.org/W2092986233","https://openalex.org/W2093529889","https://openalex.org/W2103017472","https://openalex.org/W2103547092","https://openalex.org/W2103888171","https://openalex.org/W2104812688","https://openalex.org/W2111708605","https://openalex.org/W2114185968","https://openalex.org/W2114926230","https://openalex.org/W2115235175","https://openalex.org/W2118957830","https://openalex.org/W2119482228","https://openalex.org/W2120063363","https://openalex.org/W2122909744","https://openalex.org/W2124375295","https://openalex.org/W2125890008","https://openalex.org/W2130237248","https://openalex.org/W2132056336","https://openalex.org/W2135303340","https://openalex.org/W2138397600","https://openalex.org/W2140273660","https://openalex.org/W2142411278","https://openalex.org/W2145823109","https://openalex.org/W2148762636","https://openalex.org/W2149780759","https://openalex.org/W2151078464","https://openalex.org/W2153624566","https://openalex.org/W2154241727","https://openalex.org/W2156070536","https://openalex.org/W2157312249","https://openalex.org/W2160797407","https://openalex.org/W2161174387","https://openalex.org/W2162032011","https://openalex.org/W2170743862","https://openalex.org/W2952639490","https://openalex.org/W3037819556","https://openalex.org/W3102945079"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"Motivation:":[0],"With":[1],"increasing":[2],"availability":[3],"of":[4,30,121,127,156,168,185,199,205],"temporal":[5,18,64,85,122,141,187,202,218,226],"real-world":[6],"networks,":[7],"how":[8],"to":[9,116,164,193,225,231],"efficiently":[10],"study":[11],"these":[12],"data?":[13],"One":[14],"can":[15,46],"model":[16,160,176],"a":[17,21,28,79,84,157,169,173],"network":[19,38,86,110,135,159,203,229],"as":[20,27],"single":[22],"aggregate":[23,36,56],"static":[24,37,51,109,213],"network,":[25],"or":[26,68,204],"series":[29],"time-specific":[31],"snapshots,":[32,74],"each":[33],"being":[34],"an":[35,200],"over":[39],"the":[40,54,61,70,154,166,183,186,195,212],"corresponding":[41],"time":[42],"window.":[43],"Then,":[44],"one":[45],"use":[47],"established":[48],"methods":[49],"for":[50,82,118,217],"analysis":[52],"on":[53,97,140,153],"resulting":[55],"network(s),":[57],"but":[58],"losing":[59],"in":[60,105,108],"process":[62],"valuable":[63],"information":[65,219],"either":[66],"completely,":[67],"at":[69,248],"interface":[71],"between":[72],"different":[73,131],"respectively.":[75],"Here,":[76],"we":[77,191],"develop":[78,113],"novel":[80],"approach":[81],"studying":[83],"more":[87],"explicitly,":[88],"by":[89],"capturing":[90],"inter-snapshot":[91],"relationships.\r\n\r\nResults:":[92],"We":[93,112,221],"base":[94],"our":[95,208,233],"methodology":[96],"well-established":[98],"graphlets":[99,129,181,210,224],"(subgraphs),":[100],"which":[101],"have":[102,148],"been":[103],"proven":[104],"numerous":[106],"contexts":[107],"research.":[111],"new":[114,125],"theory":[115],"allow":[117],"graphlet-based":[119],"analyses":[120],"networks.":[123],"Our":[124,179],"notion":[126],"dynamic":[128,134,180,209,223],"is":[130,162,177],"from":[132],"existing":[133],"approaches":[136],"that":[137,161],"are":[138,246],"based":[139],"motifs":[142],"(statistically":[143],"significant":[144],"subgraphs).":[145],"The":[146],"latter":[147],"limitations:":[149],"their":[150],"results":[151],"depend":[152],"choice":[155],"null":[158,175],"required":[163],"evaluate":[165],"significance":[167],"subgraph,":[170],"and":[171,197,239],"choosing":[172],"good":[174],"non-trivial.":[178],"overcome":[182],"limitations":[184],"motifs.":[188],"Also,":[189],"when":[190],"aim":[192],"characterize":[194],"structure":[196],"function":[198],"entire":[201],"individual":[206],"nodes,":[207],"outperform":[211],"graphlets.":[214],"Clearly,":[215],"accounting":[216],"helps.":[220],"apply":[222],"age-specific":[227],"molecular":[228],"data":[230,245],"deepen":[232],"limited":[234],"knowledge":[235],"about":[236],"human":[237],"aging.\r\n\r\nAvailability":[238],"implementation:":[240],"http://www.nd.edu/\u223ccone/DG.\r\n\r\nContact:":[241],"ude.dn@oknelimt\r\n\r\nSupplementary":[242],"information:":[243],"Supplementary":[244],"available":[247],"Bioinformatics":[249],"online.":[250]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
