{"id":"https://openalex.org/W2345950567","doi":"https://doi.org/10.1093/bioinformatics/btw187","title":"DyNet: visualization and analysis of dynamic molecular interaction networks","display_name":"DyNet: visualization and analysis of dynamic molecular interaction networks","publication_year":2016,"publication_date":"2016-05-03","ids":{"openalex":"https://openalex.org/W2345950567","doi":"https://doi.org/10.1093/bioinformatics/btw187","mag":"2345950567","pmid":"https://pubmed.ncbi.nlm.nih.gov/27153624"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btw187","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw187","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/2713/17345698/btw187.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/2713/17345698/btw187.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020198266","display_name":"Ivan H. Goenawan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137740","display_name":"South Australian Health and Medical Research Institute","ror":"https://ror.org/03e3kts03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210137740"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ivan H. Goenawan","raw_affiliation_strings":["1 EMBL Australia Biomedical Informatics Group, Infection and Immunity Theme, South Australian Medical and Health Research Institute, North Terrace, Adelaide, South Australia 5000, Australia"],"affiliations":[{"raw_affiliation_string":"1 EMBL Australia Biomedical Informatics Group, Infection and Immunity Theme, South Australian Medical and Health Research Institute, North Terrace, Adelaide, South Australia 5000, Australia","institution_ids":["https://openalex.org/I4210137740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044144357","display_name":"Kenneth Bryan","orcid":"https://orcid.org/0000-0002-9550-8354"},"institutions":[{"id":"https://openalex.org/I4210137740","display_name":"South Australian Health and Medical Research Institute","ror":"https://ror.org/03e3kts03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210137740"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kenneth Bryan","raw_affiliation_strings":["1 EMBL Australia Biomedical Informatics Group, Infection and Immunity Theme, South Australian Medical and Health Research Institute, North Terrace, Adelaide, South Australia 5000, Australia"],"affiliations":[{"raw_affiliation_string":"1 EMBL Australia Biomedical Informatics Group, Infection and Immunity Theme, South Australian Medical and Health Research Institute, North Terrace, Adelaide, South Australia 5000, Australia","institution_ids":["https://openalex.org/I4210137740"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085744778","display_name":"David J. Lynn","orcid":"https://orcid.org/0000-0003-4664-1404"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]},{"id":"https://openalex.org/I4210137740","display_name":"South Australian Health and Medical Research Institute","ror":"https://ror.org/03e3kts03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210137740"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"David J. Lynn","raw_affiliation_strings":["1 EMBL Australia Biomedical Informatics Group, Infection and Immunity Theme, South Australian Medical and Health Research Institute, North Terrace, Adelaide, South Australia 5000, Australia","2 School of Medicine, Flinders University, Bedford Park, South Australia 5042, Australia"],"affiliations":[{"raw_affiliation_string":"1 EMBL Australia Biomedical Informatics Group, Infection and Immunity Theme, South Australian Medical and Health Research Institute, North Terrace, Adelaide, South Australia 5000, Australia","institution_ids":["https://openalex.org/I4210137740"]},{"raw_affiliation_string":"2 School of Medicine, Flinders University, Bedford Park, South Australia 5042, Australia","institution_ids":["https://openalex.org/I169541294"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5085744778"],"corresponding_institution_ids":["https://openalex.org/I169541294","https://openalex.org/I4210137740"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.7161,"has_fulltext":false,"cited_by_count":201,"citation_normalized_percentile":{"value":0.98170703,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"17","first_page":"2713","last_page":"2715"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7092896103858948},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.69132399559021},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.5920674204826355},{"id":"https://openalex.org/keywords/dynamic-network-analysis","display_name":"Dynamic network analysis","score":0.5663434267044067},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.5320706367492676},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.5243114233016968},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4732438027858734},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43657442927360535},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3099583685398102},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.25768864154815674},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.2373153567314148},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15449294447898865},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.07524877786636353}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7092896103858948},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.69132399559021},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.5920674204826355},{"id":"https://openalex.org/C13540734","wikidata":"https://www.wikidata.org/wiki/Q5318996","display_name":"Dynamic network analysis","level":2,"score":0.5663434267044067},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.5320706367492676},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.5243114233016968},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4732438027858734},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43657442927360535},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3099583685398102},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.25768864154815674},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.2373153567314148},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15449294447898865},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.07524877786636353},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btw187","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw187","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/2713/17345698/btw187.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27153624","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27153624","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/17/2713","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/17/2713","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5013899","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5013899","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btw187","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btw187","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/17/2713/17345698/btw187.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2345950567.pdf","grobid_xml":"https://content.openalex.org/works/W2345950567.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1968213466","https://openalex.org/W2011121500","https://openalex.org/W2062533676","https://openalex.org/W2100410004","https://openalex.org/W2118971140","https://openalex.org/W2126523446","https://openalex.org/W2147566730","https://openalex.org/W2148866736","https://openalex.org/W2162032011","https://openalex.org/W2197435819","https://openalex.org/W6683805968","https://openalex.org/W6687698258"],"related_works":["https://openalex.org/W2153490111","https://openalex.org/W2889272611","https://openalex.org/W2395595192","https://openalex.org/W2180749449","https://openalex.org/W2132958441","https://openalex.org/W2767490506","https://openalex.org/W2156151509","https://openalex.org/W1975842369","https://openalex.org/W2299922160","https://openalex.org/W2345950567"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":44},{"year":2020,"cited_by_count":33},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":21},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}