{"id":"https://openalex.org/W2194675750","doi":"https://doi.org/10.1093/bioinformatics/btv712","title":"Extending gene ontology with gene association networks","display_name":"Extending gene ontology with gene association networks","publication_year":2015,"publication_date":"2015-12-07","ids":{"openalex":"https://openalex.org/W2194675750","doi":"https://doi.org/10.1093/bioinformatics/btv712","mag":"2194675750","pmid":"https://pubmed.ncbi.nlm.nih.gov/26644414"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv712","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv712","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084343474","display_name":"Jiajie Peng","orcid":"https://orcid.org/0000-0002-3857-7927"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jiajie Peng","raw_affiliation_strings":["1 School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China,","2 Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA,"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China,","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"2 Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA,","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453553","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-5728-6463"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Wang","raw_affiliation_strings":["1 School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China,"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China,","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063578134","display_name":"Jixuan Wang","orcid":"https://orcid.org/0000-0003-1986-6747"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jixuan Wang","raw_affiliation_strings":["3 School of Software, Harbin Institute of Technology, Harbin, China and"],"affiliations":[{"raw_affiliation_string":"3 School of Software, Harbin Institute of Technology, Harbin, China and","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yadong Wang","raw_affiliation_strings":["1 School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China,"],"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China,","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087924017","display_name":"Jin Chen","orcid":"https://orcid.org/0000-0001-6721-3199"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jin Chen","raw_affiliation_strings":["2 Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA,","4 Department of Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"2 Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA,","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"4 Department of Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5087924017","https://openalex.org/A5100392447"],"corresponding_institution_ids":["https://openalex.org/I204983213","https://openalex.org/I87216513"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.2301,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.94970445,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"32","issue":"8","first_page":"1185","last_page":"1194"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7665725946426392},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.6605828404426575},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.6585886478424072},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.603305459022522},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5636345744132996},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5533966422080994},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5352213382720947},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48605233430862427},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4747360646724701},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.45165786147117615},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4490509629249573},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44078847765922546},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.43641117215156555},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.42830324172973633},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36959588527679443},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25499892234802246},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2229686975479126},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19707342982292175},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14090853929519653},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10550311207771301},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.08261588215827942}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7665725946426392},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.6605828404426575},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.6585886478424072},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.603305459022522},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5636345744132996},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5533966422080994},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5352213382720947},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48605233430862427},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4747360646724701},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.45165786147117615},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4490509629249573},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44078847765922546},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.43641117215156555},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.42830324172973633},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36959588527679443},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25499892234802246},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2229686975479126},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19707342982292175},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14090853929519653},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10550311207771301},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.08261588215827942},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv712","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv712","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26644414","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26644414","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/8/1185","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/8/1185","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W46659105","https://openalex.org/W49290057","https://openalex.org/W105330602","https://openalex.org/W115163336","https://openalex.org/W1490161904","https://openalex.org/W1565377632","https://openalex.org/W1579749446","https://openalex.org/W1597538863","https://openalex.org/W1597559145","https://openalex.org/W1721137721","https://openalex.org/W1809873675","https://openalex.org/W1853598593","https://openalex.org/W1971421925","https://openalex.org/W1991160835","https://openalex.org/W2016591124","https://openalex.org/W2021487982","https://openalex.org/W2043895957","https://openalex.org/W2057119643","https://openalex.org/W2060705109","https://openalex.org/W2063389953","https://openalex.org/W2072120113","https://openalex.org/W2074755764","https://openalex.org/W2077436902","https://openalex.org/W2079883775","https://openalex.org/W2083969274","https://openalex.org/W2095237338","https://openalex.org/W2096704019","https://openalex.org/W2102752109","https://openalex.org/W2103017472","https://openalex.org/W2105362912","https://openalex.org/W2109138480","https://openalex.org/W2109763816","https://openalex.org/W2110555186","https://openalex.org/W2111191870","https://openalex.org/W2115294179","https://openalex.org/W2117405098","https://openalex.org/W2117486996","https://openalex.org/W2124436241","https://openalex.org/W2126192932","https://openalex.org/W2133102806","https://openalex.org/W2143962926","https://openalex.org/W2145902670","https://openalex.org/W2150646520","https://openalex.org/W2150926065","https://openalex.org/W2152767508","https://openalex.org/W2157471305","https://openalex.org/W2163462918","https://openalex.org/W2171775098","https://openalex.org/W2623273758","https://openalex.org/W2915108429","https://openalex.org/W3153661842","https://openalex.org/W4205774955","https://openalex.org/W4233287056","https://openalex.org/W4244963748","https://openalex.org/W4246066782","https://openalex.org/W6602002561","https://openalex.org/W6671718866"],"related_works":["https://openalex.org/W1969663039","https://openalex.org/W2314220439","https://openalex.org/W2300879143","https://openalex.org/W2135708477","https://openalex.org/W1969271108","https://openalex.org/W1996086117","https://openalex.org/W2737144052","https://openalex.org/W1987152484","https://openalex.org/W2077940944","https://openalex.org/W2776531206"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":9}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
