{"id":"https://openalex.org/W2177550115","doi":"https://doi.org/10.1093/bioinformatics/btv597","title":"PDID: database of molecular-level putative protein\u2013drug interactions in the structural human proteome","display_name":"PDID: database of molecular-level putative protein\u2013drug interactions in the structural human proteome","publication_year":2015,"publication_date":"2015-10-26","ids":{"openalex":"https://openalex.org/W2177550115","doi":"https://doi.org/10.1093/bioinformatics/btv597","mag":"2177550115"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/579/49017454/bioinformatics_32_4_579.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/579/49017454/bioinformatics_32_4_579.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100337516","display_name":"Chen Wang","orcid":"https://orcid.org/0000-0001-9127-0054"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Chen Wang","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, AB, Canada T6G 2V4,"],"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, AB, Canada T6G 2V4,","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072443515","display_name":"Gang Hu","orcid":"https://orcid.org/0000-0002-7134-3380"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gang Hu","raw_affiliation_strings":["2 School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, People\u2019s Republic of China,"],"affiliations":[{"raw_affiliation_string":"2 School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, People\u2019s Republic of China,","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100342696","display_name":"Kui Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kui Wang","raw_affiliation_strings":["2 School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, People\u2019s Republic of China,"],"affiliations":[{"raw_affiliation_string":"2 School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, People\u2019s Republic of China,","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033579800","display_name":"Micha\u0142 Bryli\u0144ski","orcid":"https://orcid.org/0000-0002-6204-2869"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michal Brylinski","raw_affiliation_strings":["3 Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA,"],"affiliations":[{"raw_affiliation_string":"3 Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA,","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066245750","display_name":"Lei Xie","orcid":"https://orcid.org/0000-0001-9051-2111"},"institutions":[{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei Xie","raw_affiliation_strings":["4 Department of Computer Science, Hunter College, City University of New York (CUNY), New York, NY 10065, USA and"],"affiliations":[{"raw_affiliation_string":"4 Department of Computer Science, Hunter College, City University of New York (CUNY), New York, NY 10065, USA and","institution_ids":["https://openalex.org/I39694355","https://openalex.org/I174216632"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088423732","display_name":"Lukasz Kurgan","orcid":"https://orcid.org/0000-0002-7749-0314"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Lukasz Kurgan","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, AB, Canada T6G 2V4,","5 Department of Computer Science, Virginia Commonwealth University, Richmond, VA 23284, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, AB, Canada T6G 2V4,","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"5 Department of Computer Science, Virginia Commonwealth University, Richmond, VA 23284, USA","institution_ids":["https://openalex.org/I184840846"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100337516"],"corresponding_institution_ids":["https://openalex.org/I154425047"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8111,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.85284909,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"32","issue":"4","first_page":"579","last_page":"586"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6881629228591919},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.6347861289978027},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5758495926856995},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5118116736412048},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43938788771629333},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4320388436317444},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31321069598197937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28099560737609863},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.25991809368133545},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17979055643081665},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.12473812699317932},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1110880970954895}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6881629228591919},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.6347861289978027},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5758495926856995},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5118116736412048},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43938788771629333},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4320388436317444},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31321069598197937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28099560737609863},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.25991809368133545},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17979055643081665},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.12473812699317932},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1110880970954895}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/579/49017454/bioinformatics_32_4_579.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:digitalcommons.lsu.edu:biosci_pubs-1631","is_oa":false,"landing_page_url":"https://digitalcommons.lsu.edu/biosci_pubs/632","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:digitalcommons.lsu.edu:eecs_pubs-2496","is_oa":false,"landing_page_url":"https://digitalcommons.lsu.edu/eecs_pubs/1494","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:europepmc.org:4938040","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5963357","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/4/579","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/4/579","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:repository.lsu.edu:biosci_pubs-1631","is_oa":false,"landing_page_url":"https://repository.lsu.edu/biosci_pubs/632","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:repository.lsu.edu:eecs_pubs-2496","is_oa":false,"landing_page_url":"https://repository.lsu.edu/eecs_pubs/1494","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/4/579/49017454/bioinformatics_32_4_579.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5}],"awards":[{"id":"https://openalex.org/G1278572012","display_name":null,"funder_award_id":"11101226","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3100389133","display_name":null,"funder_award_id":"11301286","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3159474428","display_name":null,"funder_award_id":"11501105","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G385937226","display_name":null,"funder_award_id":"11301","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4101597799","display_name":null,"funder_award_id":"31150110577","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4701932246","display_name":null,"funder_award_id":"298328","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G501593032","display_name":null,"funder_award_id":"10577","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6187852910","display_name":null,"funder_award_id":"31050110432","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7402129869","display_name":null,"funder_award_id":"LM011986","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2177550115.pdf","grobid_xml":"https://content.openalex.org/works/W2177550115.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1535607303","https://openalex.org/W1968682237","https://openalex.org/W1975875968","https://openalex.org/W1978370150","https://openalex.org/W1979947684","https://openalex.org/W1980543403","https://openalex.org/W1980969309","https://openalex.org/W1982309045","https://openalex.org/W1983248350","https://openalex.org/W1985755631","https://openalex.org/W1990495809","https://openalex.org/W1997037174","https://openalex.org/W1997813612","https://openalex.org/W1999318478","https://openalex.org/W2002044972","https://openalex.org/W2005639991","https://openalex.org/W2007287574","https://openalex.org/W2009081245","https://openalex.org/W2009682500","https://openalex.org/W2011703027","https://openalex.org/W2015147525","https://openalex.org/W2018518196","https://openalex.org/W2019450130","https://openalex.org/W2024650243","https://openalex.org/W2024908724","https://openalex.org/W2051783184","https://openalex.org/W2055043387","https://openalex.org/W2061345986","https://openalex.org/W2067455153","https://openalex.org/W2069676201","https://openalex.org/W2072728308","https://openalex.org/W2074192927","https://openalex.org/W2076764146","https://openalex.org/W2083589318","https://openalex.org/W2096541451","https://openalex.org/W2096864392","https://openalex.org/W2099466948","https://openalex.org/W2099754222","https://openalex.org/W2103566527","https://openalex.org/W2109607974","https://openalex.org/W2116398954","https://openalex.org/W2118986663","https://openalex.org/W2119470100","https://openalex.org/W2120138074","https://openalex.org/W2130479394","https://openalex.org/W2131581981","https://openalex.org/W2133035849","https://openalex.org/W2133114049","https://openalex.org/W2137690465","https://openalex.org/W2140049079","https://openalex.org/W2142572836","https://openalex.org/W2144159776","https://openalex.org/W2144258433","https://openalex.org/W2146283383","https://openalex.org/W2147241078","https://openalex.org/W2148928480","https://openalex.org/W2153613893","https://openalex.org/W2153980786","https://openalex.org/W2161032298","https://openalex.org/W2165232124","https://openalex.org/W2170146596","https://openalex.org/W2171620774","https://openalex.org/W2956071445","https://openalex.org/W4232866872","https://openalex.org/W4233334497","https://openalex.org/W4240895940"],"related_works":["https://openalex.org/W3092794487","https://openalex.org/W2094752534","https://openalex.org/W2885268310","https://openalex.org/W2025055488","https://openalex.org/W2575115220","https://openalex.org/W2580329791","https://openalex.org/W2909412621","https://openalex.org/W3032536091","https://openalex.org/W2145037531","https://openalex.org/W2234991979"],"abstract_inverted_index":{"Abstract":[0],"Motivation:":[1],"Many":[2],"drugs":[3,110,170],"interact":[4],"with":[5,82],"numerous":[6],"proteins":[7,55],"besides":[8],"their":[9,150],"intended":[10],"therapeutic":[11],"targets":[12],"and":[13,56,88,101,127,154,173,180],"a":[14],"substantial":[15],"portion":[16],"of":[17,31,75,99,103,107,169,177],"these":[18,32],"interactions":[19,40,61,100,126,145],"is":[20,184],"yet":[21],"to":[22,37,65,135,149,163,167],"be":[23,161],"elucidated.":[24],"Protein\u2013Drug":[25],"Interaction":[26],"Database":[27],"(PDID)":[28],"addresses":[29],"incompleteness":[30],"data":[33],"by":[34,93],"providing":[35],"access":[36],"putative":[38,60,105,137],"protein\u2013drug":[39],"that":[41,96,121,131],"cover":[42],"the":[43,104,108,112,118,124,128],"entire":[44],"structural":[45],"human":[46],"proteome.":[47],"Results:":[48],"PDID":[49,116,182],"covers":[50],"9652":[51],"structures":[52],"from":[53,63],"3746":[54],"houses":[57],"16":[58],"800":[59],"generated":[62,81],"close":[64],"1.1":[66],"million":[67],"accurate,":[68],"all-atom":[69],"structure-based":[70],"predictions":[71,79],"for":[72],"several":[73],"dozens":[74],"popular":[76],"drugs.":[77,178],"The":[78],"were":[80],"three":[83],"modern":[84],"methods:":[85],"ILbind,":[86],"SMAP":[87],"eFindSite.":[89],"They":[90],"are":[91,147],"accompanied":[92],"propensity":[94],"scores":[95],"quantify":[97],"likelihood":[98],"coordinates":[102],"location":[106],"binding":[109],"in":[111],"corresponding":[113],"protein":[114],"structures.":[115],"complements":[117],"current":[119],"databases":[120],"focus":[122],"on":[123,133],"curated":[125,144],"BioDrugScreen":[129],"database":[130,159,183],"relies":[132],"docking":[134],"find":[136],"interactions.":[138],"Moreover,":[139],"we":[140],"also":[141],"include":[142],"experimentally":[143],"which":[146],"linked":[148],"sources:":[151],"DrugBank,":[152],"BindingDB":[153],"Protein":[155],"Data":[156],"Bank.":[157],"Our":[158],"can":[160],"used":[162],"facilitate":[164],"studies":[165],"related":[166],"polypharmacology":[168],"including":[171],"repurposing":[172],"explaining":[174],"side":[175],"effects":[176],"Availability":[179],"implementation:":[181],"freely":[185],"available":[186],"at":[187],"http://biomine.ece.ualberta.ca/PDID/.":[188],"Contact:":[189],"lkurgan@vcu.edu":[190]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
