{"id":"https://openalex.org/W435628262","doi":"https://doi.org/10.1093/bioinformatics/btv551","title":"HapFlow: visualizing haplotypes in sequencing data","display_name":"HapFlow: visualizing haplotypes in sequencing data","publication_year":2015,"publication_date":"2015-10-07","ids":{"openalex":"https://openalex.org/W435628262","doi":"https://doi.org/10.1093/bioinformatics/btv551","mag":"435628262","pmid":"https://pubmed.ncbi.nlm.nih.gov/26449930"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/441/19567692/btv551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/441/19567692/btv551.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058881044","display_name":"Mitchell J. Sullivan","orcid":"https://orcid.org/0000-0001-9076-6963"},"institutions":[{"id":"https://openalex.org/I174025329","display_name":"University of the Sunshine Coast","ror":"https://ror.org/016gb9e15","country_code":"AU","type":"education","lineage":["https://openalex.org/I174025329"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Mitchell J. Sullivan","raw_affiliation_strings":["Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia"],"affiliations":[{"raw_affiliation_string":"Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia","institution_ids":["https://openalex.org/I174025329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018759867","display_name":"Nathan L. Bachmann","orcid":"https://orcid.org/0000-0003-2929-8544"},"institutions":[{"id":"https://openalex.org/I174025329","display_name":"University of the Sunshine Coast","ror":"https://ror.org/016gb9e15","country_code":"AU","type":"education","lineage":["https://openalex.org/I174025329"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nathan L. Bachmann","raw_affiliation_strings":["Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia"],"affiliations":[{"raw_affiliation_string":"Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia","institution_ids":["https://openalex.org/I174025329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055511264","display_name":"Peter Timms","orcid":"https://orcid.org/0000-0002-1682-0025"},"institutions":[{"id":"https://openalex.org/I174025329","display_name":"University of the Sunshine Coast","ror":"https://ror.org/016gb9e15","country_code":"AU","type":"education","lineage":["https://openalex.org/I174025329"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Peter Timms","raw_affiliation_strings":["Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia"],"affiliations":[{"raw_affiliation_string":"Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia","institution_ids":["https://openalex.org/I174025329"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091654988","display_name":"Adam Polkinghorne","orcid":null},"institutions":[{"id":"https://openalex.org/I174025329","display_name":"University of the Sunshine Coast","ror":"https://ror.org/016gb9e15","country_code":"AU","type":"education","lineage":["https://openalex.org/I174025329"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Adam Polkinghorne","raw_affiliation_strings":["Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia"],"affiliations":[{"raw_affiliation_string":"Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia","institution_ids":["https://openalex.org/I174025329"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058881044"],"corresponding_institution_ids":["https://openalex.org/I174025329"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1509,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.54813386,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"32","issue":"3","first_page":"441","last_page":"443"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7798545360565186},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.7714283466339111},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.71922767162323},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.7058729529380798},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6959478259086609},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.6173727512359619},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4751023054122925},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4603985846042633},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4382345676422119},{"id":"https://openalex.org/keywords/microsoft-windows","display_name":"Microsoft Windows","score":0.42601072788238525},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4231588840484619},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3133087456226349},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2679469585418701},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2547852098941803},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22058945894241333},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2140967845916748},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11934664845466614},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05692705512046814}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7798545360565186},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.7714283466339111},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.71922767162323},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.7058729529380798},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6959478259086609},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.6173727512359619},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4751023054122925},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4603985846042633},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4382345676422119},{"id":"https://openalex.org/C508378895","wikidata":"https://www.wikidata.org/wiki/Q1406","display_name":"Microsoft Windows","level":3,"score":0.42601072788238525},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4231588840484619},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3133087456226349},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2679469585418701},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2547852098941803},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22058945894241333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2140967845916748},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11934664845466614},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05692705512046814},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002689","descriptor_name":"Chlamydia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002689","descriptor_name":"Chlamydia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002689","descriptor_name":"Chlamydia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002689","descriptor_name":"Chlamydia","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D002689","descriptor_name":"Chlamydia","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D002689","descriptor_name":"Chlamydia","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D002690","descriptor_name":"Chlamydia Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002690","descriptor_name":"Chlamydia Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002690","descriptor_name":"Chlamydia Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002690","descriptor_name":"Chlamydia Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D002690","descriptor_name":"Chlamydia Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D002690","descriptor_name":"Chlamydia Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014552","descriptor_name":"Urinary Tract Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014552","descriptor_name":"Urinary Tract Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014552","descriptor_name":"Urinary Tract Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D048368","descriptor_name":"Phascolarctidae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048368","descriptor_name":"Phascolarctidae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048368","descriptor_name":"Phascolarctidae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048368","descriptor_name":"Phascolarctidae","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D048368","descriptor_name":"Phascolarctidae","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D048368","descriptor_name":"Phascolarctidae","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btv551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/441/19567692/btv551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26449930","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26449930","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:28edb62","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/3/441","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/3/441","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:research.usc.edu.au:usc:18550","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1093/bioinformatics/btv551","pdf_url":null,"source":{"id":"https://openalex.org/S4377196572","display_name":"USC Research Bank (University of the Sunshine Coast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174025329","host_organization_name":"University of the Sunshine Coast","host_organization_lineage":["https://openalex.org/I174025329"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/441/19567692/btv551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W435628262.pdf","grobid_xml":"https://content.openalex.org/works/W435628262.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1596062789","https://openalex.org/W1978191903","https://openalex.org/W2009772825","https://openalex.org/W2108234281","https://openalex.org/W2111174498","https://openalex.org/W2122270655","https://openalex.org/W2135406516","https://openalex.org/W2146663795","https://openalex.org/W2148683465","https://openalex.org/W2149992227","https://openalex.org/W2155465294","https://openalex.org/W2163326395","https://openalex.org/W2170551349","https://openalex.org/W6635813232"],"related_works":["https://openalex.org/W634263678","https://openalex.org/W2501958676","https://openalex.org/W605022873","https://openalex.org/W586125253","https://openalex.org/W1769567533","https://openalex.org/W2333003759","https://openalex.org/W2132241624","https://openalex.org/W2471374216","https://openalex.org/W4311683883","https://openalex.org/W1603220108"],"abstract_inverted_index":{"apolking@usc.edu.au.":[0]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}