{"id":"https://openalex.org/W1447895962","doi":"https://doi.org/10.1093/bioinformatics/btv534","title":"P-SAMS: a web site for plant artificial microRNA and synthetic <i>trans</i>-acting small interfering RNA design","display_name":"P-SAMS: a web site for plant artificial microRNA and synthetic <i>trans</i>-acting small interfering RNA design","publication_year":2015,"publication_date":"2015-09-17","ids":{"openalex":"https://openalex.org/W1447895962","doi":"https://doi.org/10.1093/bioinformatics/btv534","mag":"1447895962","pmid":"https://pubmed.ncbi.nlm.nih.gov/26382195"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv534","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv534","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/157/49016365/bioinformatics_32_1_157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/157/49016365/bioinformatics_32_1_157.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081729327","display_name":"Noah Fahlgren","orcid":"https://orcid.org/0000-0002-5597-4537"},"institutions":[{"id":"https://openalex.org/I2799511691","display_name":"Donald Danforth Plant Science Center","ror":"https://ror.org/000cyem11","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799511691"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Noah Fahlgren","raw_affiliation_strings":["Donald Danforth Plant Science Center, St. Louis, MO 63132, USA"],"affiliations":[{"raw_affiliation_string":"Donald Danforth Plant Science Center, St. Louis, MO 63132, USA","institution_ids":["https://openalex.org/I2799511691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013390717","display_name":"Steven T. Hill","orcid":null},"institutions":[{"id":"https://openalex.org/I2799511691","display_name":"Donald Danforth Plant Science Center","ror":"https://ror.org/000cyem11","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799511691"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven T. Hill","raw_affiliation_strings":["Donald Danforth Plant Science Center, St. Louis, MO 63132, USA"],"affiliations":[{"raw_affiliation_string":"Donald Danforth Plant Science Center, St. Louis, MO 63132, USA","institution_ids":["https://openalex.org/I2799511691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039889442","display_name":"James C. Carrington","orcid":"https://orcid.org/0000-0003-3572-129X"},"institutions":[{"id":"https://openalex.org/I2799511691","display_name":"Donald Danforth Plant Science Center","ror":"https://ror.org/000cyem11","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799511691"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James C. Carrington","raw_affiliation_strings":["Donald Danforth Plant Science Center, St. Louis, MO 63132, USA"],"affiliations":[{"raw_affiliation_string":"Donald Danforth Plant Science Center, St. Louis, MO 63132, USA","institution_ids":["https://openalex.org/I2799511691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009286611","display_name":"Alberto Carbonell","orcid":"https://orcid.org/0000-0001-5628-6632"},"institutions":[{"id":"https://openalex.org/I2799511691","display_name":"Donald Danforth Plant Science Center","ror":"https://ror.org/000cyem11","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799511691"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alberto Carbonell","raw_affiliation_strings":["Donald Danforth Plant Science Center, St. Louis, MO 63132, USA"],"affiliations":[{"raw_affiliation_string":"Donald Danforth Plant Science Center, St. Louis, MO 63132, USA","institution_ids":["https://openalex.org/I2799511691"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5081729327"],"corresponding_institution_ids":["https://openalex.org/I2799511691"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.7569,"has_fulltext":true,"cited_by_count":84,"citation_normalized_percentile":{"value":0.96493904,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"32","issue":"1","first_page":"157","last_page":"158"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.6362078785896301},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6199679374694824},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5951570868492126},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5653523802757263},{"id":"https://openalex.org/keywords/gene-silencing","display_name":"Gene silencing","score":0.5109864473342896},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.47918593883514404},{"id":"https://openalex.org/keywords/small-interfering-rna","display_name":"Small interfering RNA","score":0.45309191942214966},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43117713928222656},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4162411093711853},{"id":"https://openalex.org/keywords/cloning","display_name":"Cloning (programming)","score":0.41614076495170593},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36820468306541443},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2566947638988495},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1410127580165863}],"concepts":[{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.6362078785896301},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6199679374694824},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5951570868492126},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5653523802757263},{"id":"https://openalex.org/C119056186","wikidata":"https://www.wikidata.org/wiki/Q1431332","display_name":"Gene silencing","level":3,"score":0.5109864473342896},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.47918593883514404},{"id":"https://openalex.org/C22615655","wikidata":"https://www.wikidata.org/wiki/Q203221","display_name":"Small interfering RNA","level":4,"score":0.45309191942214966},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43117713928222656},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4162411093711853},{"id":"https://openalex.org/C121050878","wikidata":"https://www.wikidata.org/wiki/Q5135020","display_name":"Cloning (programming)","level":2,"score":0.41614076495170593},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36820468306541443},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2566947638988495},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1410127580165863}],"mesh":[{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btv534","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv534","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/157/49016365/bioinformatics_32_1_157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26382195","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26382195","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/343323","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/343323","pdf_url":"https://digital.csic.es/bitstream/10261/343323/1/Bioinformatics-2016-Fahlgren-157-8.pdf","source":{"id":"https://openalex.org/S4306401639","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:4681993","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4681993","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:riunet.upv.es:10251/161198","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/161198","pdf_url":null,"source":{"id":"https://openalex.org/S4306401500","display_name":"RiuNet (Politechnical University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv534","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv534","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/157/49016365/bioinformatics_32_1_157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1835758994","display_name":null,"funder_award_id":"MCB-1231726","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G251899819","display_name":null,"funder_award_id":"AI043288","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2710054016","display_name":null,"funder_award_id":"1330562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5129416011","display_name":"Function of Arabidopsis Small RNA-ARGONAUTE Complexes","funder_award_id":"1231726","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5224055675","display_name":null,"funder_award_id":"MCB-1330562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6593086684","display_name":null,"funder_award_id":"MOW-2012-01361","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1447895962.pdf","grobid_xml":"https://content.openalex.org/works/W1447895962.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W177743506","https://openalex.org/W2004778544","https://openalex.org/W2030740829","https://openalex.org/W2093099506","https://openalex.org/W2096183596","https://openalex.org/W2097432569","https://openalex.org/W2135655483","https://openalex.org/W2409118254"],"related_works":["https://openalex.org/W1996749599","https://openalex.org/W3140432620","https://openalex.org/W1978057048","https://openalex.org/W2165430941","https://openalex.org/W1966962897","https://openalex.org/W2065502723","https://openalex.org/W2105774848","https://openalex.org/W4388050945","https://openalex.org/W1981917339","https://openalex.org/W1649999227"],"abstract_inverted_index":{"acarbonell@ibmcp.upv.es":[0],"or":[1],"nfahlgren@danforthcenter.org.":[2]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2016-06-24T00:00:00"}
