{"id":"https://openalex.org/W2149070417","doi":"https://doi.org/10.1093/bioinformatics/btv455","title":"Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose\u2013response data","display_name":"Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose\u2013response data","publication_year":2015,"publication_date":"2015-08-07","ids":{"openalex":"https://openalex.org/W2149070417","doi":"https://doi.org/10.1093/bioinformatics/btv455","mag":"2149070417","pmid":"https://pubmed.ncbi.nlm.nih.gov/26254433"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv455","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3815/49036005/bioinformatics_31_23_3815.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3815/49036005/bioinformatics_31_23_3815.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038194713","display_name":"John-Patrick Mpindi","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"John-Patrick Mpindi","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053034632","display_name":"Swapnil Potdar","orcid":"https://orcid.org/0000-0002-2778-6918"},"institutions":[{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Potdar Swapnil","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058211125","display_name":"Dmitrii Bychkov","orcid":"https://orcid.org/0000-0003-1579-1127"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Bychkov Dmitrii","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062171296","display_name":"Jani Saarela","orcid":"https://orcid.org/0000-0001-7306-7175"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Saarela Jani","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027270602","display_name":"Khalid Saeed","orcid":"https://orcid.org/0000-0001-9679-683X"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Khalid Saeed","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067760174","display_name":"Krister Wennerberg","orcid":"https://orcid.org/0000-0002-1352-4220"},"institutions":[{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Krister Wennerberg","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016681267","display_name":"Tero Aittokallio","orcid":"https://orcid.org/0000-0002-0886-9769"},"institutions":[{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tero Aittokallio","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078078476","display_name":"P\u00e4ivi \u00d6stling","orcid":"https://orcid.org/0000-0001-5501-466X"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"P\u00e4ivi \u00d6stling","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050670008","display_name":"Olli Kallioniemi","orcid":"https://orcid.org/0000-0002-3231-0332"},"institutions":[{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Olli Kallioniemi","raw_affiliation_strings":["University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Helsinki, Institute for Molecular Medicine, Tukholmankatu 8, FI-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586","https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5038194713"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.942,"has_fulltext":false,"cited_by_count":41,"citation_normalized_percentile":{"value":0.95474847,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"31","issue":"23","first_page":"3815","last_page":"3821"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.35670000314712524,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.35670000314712524,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.1906999945640564,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.0908999964594841,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.8398581743240356},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5762008428573608},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.44637900590896606},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3497222661972046},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3376154601573944},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23552024364471436},{"id":"https://openalex.org/keywords/electronic-engineering","display_name":"Electronic engineering","score":0.12749198079109192},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1228911280632019}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.8398581743240356},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5762008428573608},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.44637900590896606},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3497222661972046},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3376154601573944},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23552024364471436},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.12749198079109192},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1228911280632019},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D014407","descriptor_name":"Tumor Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014407","descriptor_name":"Tumor Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014407","descriptor_name":"Tumor Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btv455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv455","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3815/49036005/bioinformatics_31_23_3815.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26254433","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26254433","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:helda.helsinki.fi:10138/225095","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/225095","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/23/3815","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/23/3815","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4653387","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4653387","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv455","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3815/49036005/bioinformatics_31_23_3815.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149070417.pdf","grobid_xml":"https://content.openalex.org/works/W2149070417.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1836834096","https://openalex.org/W1969391810","https://openalex.org/W1991001144","https://openalex.org/W1998746695","https://openalex.org/W2002783575","https://openalex.org/W2006379075","https://openalex.org/W2008621428","https://openalex.org/W2030528974","https://openalex.org/W2034476680","https://openalex.org/W2043398720","https://openalex.org/W2054958397","https://openalex.org/W2059586354","https://openalex.org/W2064315321","https://openalex.org/W2087312216","https://openalex.org/W2097449851","https://openalex.org/W2098480759","https://openalex.org/W2101080130","https://openalex.org/W2101758848","https://openalex.org/W2108068107","https://openalex.org/W2115517051","https://openalex.org/W2116490460","https://openalex.org/W2122357584","https://openalex.org/W2125789330","https://openalex.org/W2128966273","https://openalex.org/W2135661313","https://openalex.org/W2141064379","https://openalex.org/W2150091347","https://openalex.org/W2157069656","https://openalex.org/W2162424885","https://openalex.org/W2166393666","https://openalex.org/W2168745915","https://openalex.org/W2313339984"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2953716828","https://openalex.org/W2904857019","https://openalex.org/W2944728705","https://openalex.org/W3011538607","https://openalex.org/W2051487156","https://openalex.org/W2904022177","https://openalex.org/W2591697403","https://openalex.org/W4321441197","https://openalex.org/W2073681303"],"abstract_inverted_index":{"MOTIVATION:":[0],"Most":[1],"data":[2,67,182,254],"analysis":[3],"tools":[4],"for":[5,14,66,70,238],"high-throughput":[6],"screening":[7,36],"(HTS)":[8],"seek":[9],"to":[10,120,155,180,188,222],"uncover":[11],"interesting":[12],"hits":[13,123],"further":[15],"analysis.":[16],"They":[17],"typically":[18],"assume":[19],"a":[20,62,90,115,138,199,202,212],"low":[21],"hit":[22],"rate":[23],"per":[24,124,207],"plate.":[25],"Hit":[26],"rates":[27],"can":[28],"be":[29,186],"dramatically":[30],"higher":[31],"in":[32,38,137,172,229],"secondary":[33],"screening,":[34],"RNAi":[35],"and":[37,69,72,81,87,209,226,235,252],"drug":[39,48,100,161],"sensitivity":[40,49,101],"testing":[41,50,162],"using":[42,211],"biologically":[43],"active":[44],"drugs.":[45],"In":[46,167],"particular,":[47,168],"on":[51,57,191],"primary":[52],"cells":[53],"is":[54,236],"often":[55],"based":[56],"dose-response":[58,241],"experiments,":[59],"which":[60,151,184],"pose":[61],"more":[63],"stringent":[64],"requirement":[65],"quality":[68],"intra-":[71],"inter-plate":[73],"variation.":[74],"Here,":[75],"we":[76],"compared":[77],"common":[78],"plate":[79,107,208],"normalization":[80,174,210],"noise-reduction":[82],"methods,":[83],"including":[84],"the":[85,88,131,134,147,152,169,192],"B-score":[86,170],"Loess":[89,220],"local":[91],"polynomial":[92,213],"fit":[93,216],"method":[94],"under":[95],"high":[96,176,233],"hit-rate":[97,149,177],"scenarios":[98],"of":[99,117,133,175,201,205],"testing.":[102],"We":[103,142,196],"generated":[104],"simulated":[105],"384-well":[106],"HTS":[108,230],"datasets,":[109],"each":[110],"with":[111,126,232],"71":[112],"plates":[113,135],"having":[114],"range":[116],"20":[118],"(5%)":[119],"160":[121],"(42%)":[122],"plate,":[125],"controls":[127,206],"placed":[128],"either":[129],"at":[130,257],"edge":[132,227],"or":[136],"scattered":[139,203],"configuration.":[140],"RESULTS:":[141],"identified":[143],"20%":[144],"(77/384)":[145],"as":[146,219],"critical":[148],"after":[150],"normalizations":[153],"started":[154],"perform":[156],"poorly.":[157],"Results":[158],"from":[159],"real":[160],"experiments":[163,231],"supported":[164],"this":[165],"estimation.":[166],"resulted":[171],"incorrect":[173],"plates,":[178],"leading":[179],"poor":[181],"quality,":[183],"could":[185],"attributed":[187],"its":[189],"dependency":[190],"median":[193],"polish":[194],"algorithm.":[195],"conclude":[197],"that":[198],"combination":[200],"layout":[204],"least":[214],"squares":[215],"method,":[217],"such":[218],"helps":[221],"reduce":[223],"column,":[224],"row":[225],"effects":[228],"hit-rates":[234],"optimal":[237],"generating":[239],"accurate":[240],"curves.":[242],"CONTACT:":[243],"john.mpindi@helsinki.fi.":[244],"AVAILABILITY":[245],"AND":[246],"IMPLEMENTATION:":[247],"Supplementary":[248,253],"information:":[249],"R":[250],"code":[251],"are":[255],"available":[256],"Bioinformatics":[258],"online.":[259]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":7},{"year":2015,"cited_by_count":1}],"updated_date":"2026-05-08T15:41:06.802602","created_date":"2025-10-10T00:00:00"}
