{"id":"https://openalex.org/W2140966642","doi":"https://doi.org/10.1093/bioinformatics/btu519","title":"Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications","display_name":"Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W2140966642","doi":"https://doi.org/10.1093/bioinformatics/btu519","mag":"2140966642","pmid":"https://pubmed.ncbi.nlm.nih.gov/25086003"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu519","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3143/48931210/bioinformatics_30_22_3143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3143/48931210/bioinformatics_30_22_3143.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030617406","display_name":"Eduardo Gade Gusmao","orcid":"https://orcid.org/0000-0001-7461-1443"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]},{"id":"https://openalex.org/I4210153965","display_name":"Max Planck Institute for Biology of Ageing","ror":"https://ror.org/04xx1tc24","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210153965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Eduardo G. Gusmao","raw_affiliation_strings":["1 IZKF Computational Biology Research Group, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, 2 Computational RNA Biology Lab and Bioinformatics Core, Max Planck Institute for Biology of Ageing, 50931 Cologne, 3 Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074, 4 Helmholtz Institute for Biomedical Engineering, 52074, 5 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, 52062 Aachen, Germany and 6 Center of Informatics, Federal University of Pernambuco, 50740560 Recife-PE, Brazil"],"affiliations":[{"raw_affiliation_string":"1 IZKF Computational Biology Research Group, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, 2 Computational RNA Biology Lab and Bioinformatics Core, Max Planck Institute for Biology of Ageing, 50931 Cologne, 3 Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074, 4 Helmholtz Institute for Biomedical Engineering, 52074, 5 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, 52062 Aachen, Germany and 6 Center of Informatics, Federal University of Pernambuco, 50740560 Recife-PE, Brazil","institution_ids":["https://openalex.org/I887968799","https://openalex.org/I4210153965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083154676","display_name":"Christoph Dieterich","orcid":"https://orcid.org/0000-0001-9468-6311"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]},{"id":"https://openalex.org/I4210153965","display_name":"Max Planck Institute for Biology of Ageing","ror":"https://ror.org/04xx1tc24","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210153965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Dieterich","raw_affiliation_strings":["1 IZKF Computational Biology Research Group, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, 2 Computational RNA Biology Lab and Bioinformatics Core, Max Planck Institute for Biology of Ageing, 50931 Cologne, 3 Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074, 4 Helmholtz Institute for Biomedical Engineering, 52074, 5 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, 52062 Aachen, Germany and 6 Center of Informatics, Federal University of Pernambuco, 50740560 Recife-PE, Brazil"],"affiliations":[{"raw_affiliation_string":"1 IZKF Computational Biology Research Group, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, 2 Computational RNA Biology Lab and Bioinformatics Core, Max Planck Institute for Biology of Ageing, 50931 Cologne, 3 Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074, 4 Helmholtz Institute for Biomedical Engineering, 52074, 5 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, 52062 Aachen, Germany and 6 Center of Informatics, Federal University of Pernambuco, 50740560 Recife-PE, Brazil","institution_ids":["https://openalex.org/I887968799","https://openalex.org/I4210153965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004290451","display_name":"Martin Zenke","orcid":"https://orcid.org/0000-0002-1107-3251"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]},{"id":"https://openalex.org/I4210153965","display_name":"Max Planck Institute for Biology of Ageing","ror":"https://ror.org/04xx1tc24","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210153965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Zenke","raw_affiliation_strings":["1 IZKF Computational Biology Research Group, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, 2 Computational RNA Biology Lab and Bioinformatics Core, Max Planck Institute for Biology of Ageing, 50931 Cologne, 3 Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074, 4 Helmholtz Institute for Biomedical Engineering, 52074, 5 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, 52062 Aachen, Germany and 6 Center of Informatics, Federal University of Pernambuco, 50740560 Recife-PE, Brazil"],"affiliations":[{"raw_affiliation_string":"1 IZKF Computational Biology Research Group, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, 2 Computational RNA Biology Lab and Bioinformatics Core, Max Planck Institute for Biology of Ageing, 50931 Cologne, 3 Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074, 4 Helmholtz Institute for Biomedical Engineering, 52074, 5 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, 52062 Aachen, Germany and 6 Center of Informatics, Federal University of Pernambuco, 50740560 Recife-PE, Brazil","institution_ids":["https://openalex.org/I887968799","https://openalex.org/I4210153965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057250270","display_name":"Ivan G. Costa","orcid":"https://orcid.org/0000-0003-2890-8697"},"institutions":[{"id":"https://openalex.org/I4210153965","display_name":"Max Planck Institute for Biology of Ageing","ror":"https://ror.org/04xx1tc24","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210153965"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ivan G. Costa","raw_affiliation_strings":["1 IZKF Computational Biology Research Group, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, 2 Computational RNA Biology Lab and Bioinformatics Core, Max Planck Institute for Biology of Ageing, 50931 Cologne, 3 Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074, 4 Helmholtz Institute for Biomedical Engineering, 52074, 5 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, 52062 Aachen, Germany and 6 Center of Informatics, Federal University of Pernambuco, 50740560 Recife-PE, Brazil"],"affiliations":[{"raw_affiliation_string":"1 IZKF Computational Biology Research Group, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, 2 Computational RNA Biology Lab and Bioinformatics Core, Max Planck Institute for Biology of Ageing, 50931 Cologne, 3 Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, 52074, 4 Helmholtz Institute for Biomedical Engineering, 52074, 5 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, 52062 Aachen, Germany and 6 Center of Informatics, Federal University of Pernambuco, 50740560 Recife-PE, Brazil","institution_ids":["https://openalex.org/I887968799","https://openalex.org/I4210153965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030617406"],"corresponding_institution_ids":["https://openalex.org/I4210153965","https://openalex.org/I887968799"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.1373,"has_fulltext":false,"cited_by_count":107,"citation_normalized_percentile":{"value":0.92393063,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"30","issue":"22","first_page":"3143","last_page":"3151"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7704863548278809},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6857735514640808},{"id":"https://openalex.org/keywords/hypersensitive-site","display_name":"Hypersensitive site","score":0.6430033445358276},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.5838877558708191},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5729421377182007},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5574893951416016},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.5358847975730896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45661020278930664},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4363898038864136},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4266500473022461},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.41967862844467163},{"id":"https://openalex.org/keywords/chromatin-immunoprecipitation","display_name":"Chromatin immunoprecipitation","score":0.416459858417511},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3903185725212097},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3618975579738617},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3511587381362915},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3377061188220978},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28638944029808044},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22917130589485168},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.204265296459198},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.13703447580337524},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.10842573642730713}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7704863548278809},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6857735514640808},{"id":"https://openalex.org/C58237431","wikidata":"https://www.wikidata.org/wiki/Q5958570","display_name":"Hypersensitive site","level":5,"score":0.6430033445358276},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.5838877558708191},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5729421377182007},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5574893951416016},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5358847975730896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45661020278930664},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4363898038864136},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4266500473022461},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.41967862844467163},{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.416459858417511},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3903185725212097},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3618975579738617},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3511587381362915},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3377061188220978},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28638944029808044},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22917130589485168},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.204265296459198},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.13703447580337524},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.10842573642730713}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003850","descriptor_name":"Deoxyribonuclease I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003850","descriptor_name":"Deoxyribonuclease I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003850","descriptor_name":"Deoxyribonuclease I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020014","descriptor_name":"K562 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020014","descriptor_name":"K562 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020014","descriptor_name":"K562 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023302","descriptor_name":"Protein Footprinting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023302","descriptor_name":"Protein Footprinting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023302","descriptor_name":"Protein Footprinting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu519","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3143/48931210/bioinformatics_30_22_3143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25086003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25086003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:publications.rwth-aachen.de:459586","is_oa":false,"landing_page_url":"https://publications.rwth-aachen.de/search?p=id:%22RWTH-CONV-090379%22","pdf_url":null,"source":{"id":"https://openalex.org/S4306401362","display_name":"RWTH Publications (RWTH Aachen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887968799","host_organization_name":"RWTH Aachen University","host_organization_lineage":["https://openalex.org/I887968799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 30(22), 3143-3151 (2014). doi:10.1093/bioinformatics/btu519","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.mpg.de:item_2189582","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0028-58F4-5","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu519","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu519","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3143/48931210/bioinformatics_30_22_3143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.5199999809265137}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140966642.pdf","grobid_xml":"https://content.openalex.org/works/W2140966642.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W15476667","https://openalex.org/W1964733653","https://openalex.org/W1964963969","https://openalex.org/W1965428318","https://openalex.org/W1989338936","https://openalex.org/W2008051478","https://openalex.org/W2018219462","https://openalex.org/W2019003441","https://openalex.org/W2044164623","https://openalex.org/W2057586248","https://openalex.org/W2078034709","https://openalex.org/W2095791120","https://openalex.org/W2100061607","https://openalex.org/W2101234009","https://openalex.org/W2105924780","https://openalex.org/W2111353388","https://openalex.org/W2112741367","https://openalex.org/W2114850508","https://openalex.org/W2115272837","https://openalex.org/W2118515267","https://openalex.org/W2121607820","https://openalex.org/W2124514674","https://openalex.org/W2125838338","https://openalex.org/W2132033095","https://openalex.org/W2135030836","https://openalex.org/W2142410561","https://openalex.org/W2149769193","https://openalex.org/W2152071686","https://openalex.org/W2156627746","https://openalex.org/W2158850335","https://openalex.org/W2159164310","https://openalex.org/W2171808845","https://openalex.org/W2259938310","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2050769938","https://openalex.org/W1971216836","https://openalex.org/W2197048537","https://openalex.org/W2130750927","https://openalex.org/W2167672183","https://openalex.org/W1616571679","https://openalex.org/W2987557706","https://openalex.org/W2124137981","https://openalex.org/W3198705972","https://openalex.org/W2188778586"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
