{"id":"https://openalex.org/W2162561599","doi":"https://doi.org/10.1093/bioinformatics/btu460","title":"A new statistical framework to assess structural alignment quality using information compression","display_name":"A new statistical framework to assess structural alignment quality using information compression","publication_year":2014,"publication_date":"2014-08-22","ids":{"openalex":"https://openalex.org/W2162561599","doi":"https://doi.org/10.1093/bioinformatics/btu460","mag":"2162561599","pmid":"https://pubmed.ncbi.nlm.nih.gov/25161241"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i512/512952/btu460.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i512/512952/btu460.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007992381","display_name":"James H. Collier","orcid":"https://orcid.org/0000-0002-0020-421X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"James H. Collier","raw_affiliation_strings":["1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065385022","display_name":"Lloyd Allison","orcid":"https://orcid.org/0000-0002-9020-3164"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Lloyd Allison","raw_affiliation_strings":["1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057325979","display_name":"Arthur M. Lesk","orcid":"https://orcid.org/0000-0002-2596-0601"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Arthur M. Lesk","raw_affiliation_strings":["1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083095334","display_name":"Mar\u00eda Garc\u00eda de la Banda","orcid":"https://orcid.org/0000-0002-6666-514X"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Maria Garcia de la Banda","raw_affiliation_strings":["1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515","https://openalex.org/I56590836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081792355","display_name":"Arun S. Konagurthu","orcid":"https://orcid.org/0000-0002-1610-8329"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Arun S. Konagurthu","raw_affiliation_strings":["1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"1 Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia and 2Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515","https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5081792355"],"corresponding_institution_ids":["https://openalex.org/I130769515","https://openalex.org/I56590836"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.854,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.7367754,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"30","issue":"17","first_page":"i512","last_page":"i518"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7090681195259094},{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.586353063583374},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.563328206539154},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.49971485137939453},{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.42551106214523315},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4221409857273102},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4177984297275543},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3396434485912323},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28109389543533325},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.2692912817001343},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14830684661865234},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.13194948434829712}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7090681195259094},{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.586353063583374},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.563328206539154},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.49971485137939453},{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.42551106214523315},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4221409857273102},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4177984297275543},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3396434485912323},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28109389543533325},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.2692912817001343},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14830684661865234},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.13194948434829712},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i512/512952/btu460.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25161241","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25161241","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4147913","is_oa":true,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btu460","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i512/512952/btu460.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162561599.pdf","grobid_xml":"https://content.openalex.org/works/W2162561599.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1864487875","https://openalex.org/W1973578915","https://openalex.org/W1995875735","https://openalex.org/W2005097301","https://openalex.org/W2014753445","https://openalex.org/W2031901496","https://openalex.org/W2033467111","https://openalex.org/W2044532497","https://openalex.org/W2056807348","https://openalex.org/W2081771568","https://openalex.org/W2094519647","https://openalex.org/W2095800081","https://openalex.org/W2102015425","https://openalex.org/W2110381504","https://openalex.org/W2117077088","https://openalex.org/W2125062378","https://openalex.org/W2127793522","https://openalex.org/W2137146016","https://openalex.org/W2144333666","https://openalex.org/W2165432485","https://openalex.org/W3152507489","https://openalex.org/W4235848672","https://openalex.org/W4246202668","https://openalex.org/W6631907011","https://openalex.org/W6684386212"],"related_works":["https://openalex.org/W3106969033","https://openalex.org/W2186939576","https://openalex.org/W2357988910","https://openalex.org/W2377158164","https://openalex.org/W2187600494","https://openalex.org/W2114030128","https://openalex.org/W2948148442","https://openalex.org/W2135707701","https://openalex.org/W2352493357","https://openalex.org/W4385300891"],"abstract_inverted_index":{"Online":[0],"supplementary":[1],"data":[2],"are":[3],"available":[4],"at":[5],"http://lcb.infotech.monash.edu.au/I-value/suppl.html.":[6]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
