{"id":"https://openalex.org/W1969480602","doi":"https://doi.org/10.1093/bioinformatics/btu398","title":"A multiobjective method for robust identification of bacterial small non-coding RNAs","display_name":"A multiobjective method for robust identification of bacterial small non-coding RNAs","publication_year":2014,"publication_date":"2014-06-23","ids":{"openalex":"https://openalex.org/W1969480602","doi":"https://doi.org/10.1093/bioinformatics/btu398","mag":"1969480602","pmid":"https://pubmed.ncbi.nlm.nih.gov/24958812"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu398","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu398","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/20/2875/48929875/bioinformatics_30_20_2875.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/20/2875/48929875/bioinformatics_30_20_2875.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049893062","display_name":"Javier Arnedo","orcid":"https://orcid.org/0000-0002-0380-5248"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Javier Arnedo","raw_affiliation_strings":["1 Department of Computer Science and Artificial Intelligence, Universidad de Granada, Granada 18071, Spain, 2 Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA. Hospitales Universitarios de Granada/Universidad de Granada, Granada, Spain and 3 Department of Psychiatry at Washington University, St. Louis, MO 63130, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Artificial Intelligence, Universidad de Granada, Granada 18071, Spain, 2 Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA. Hospitales Universitarios de Granada/Universidad de Granada, Granada, Spain and 3 Department of Psychiatry at Washington University, St. Louis, MO 63130, USA","institution_ids":["https://openalex.org/I4210113665","https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017737281","display_name":"Roc\u00edo Romero\u2010Zaliz","orcid":"https://orcid.org/0000-0003-4500-9781"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roc\u00edo Romero-Zaliz","raw_affiliation_strings":["1 Department of Computer Science and Artificial Intelligence, Universidad de Granada, Granada 18071, Spain, 2 Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA. Hospitales Universitarios de Granada/Universidad de Granada, Granada, Spain and 3 Department of Psychiatry at Washington University, St. Louis, MO 63130, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Artificial Intelligence, Universidad de Granada, Granada 18071, Spain, 2 Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA. Hospitales Universitarios de Granada/Universidad de Granada, Granada, Spain and 3 Department of Psychiatry at Washington University, St. Louis, MO 63130, USA","institution_ids":["https://openalex.org/I4210113665","https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009082904","display_name":"Igor Zwir","orcid":"https://orcid.org/0000-0002-1443-0234"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Igor Zwir","raw_affiliation_strings":["1 Department of Computer Science and Artificial Intelligence, Universidad de Granada, Granada 18071, Spain, 2 Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA. Hospitales Universitarios de Granada/Universidad de Granada, Granada, Spain and 3 Department of Psychiatry at Washington University, St. Louis, MO 63130, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Artificial Intelligence, Universidad de Granada, Granada 18071, Spain, 2 Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA. Hospitales Universitarios de Granada/Universidad de Granada, Granada, Spain and 3 Department of Psychiatry at Washington University, St. Louis, MO 63130, USA","institution_ids":["https://openalex.org/I4210113665","https://openalex.org/I173304897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037940023","display_name":"Coral del Val","orcid":"https://orcid.org/0000-0002-2212-2039"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Coral del Val","raw_affiliation_strings":["1 Department of Computer Science and Artificial Intelligence, Universidad de Granada, Granada 18071, Spain, 2 Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA. Hospitales Universitarios de Granada/Universidad de Granada, Granada, Spain and 3 Department of Psychiatry at Washington University, St. Louis, MO 63130, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Artificial Intelligence, Universidad de Granada, Granada 18071, Spain, 2 Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA. Hospitales Universitarios de Granada/Universidad de Granada, Granada, Spain and 3 Department of Psychiatry at Washington University, St. Louis, MO 63130, USA","institution_ids":["https://openalex.org/I4210113665","https://openalex.org/I173304897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5049893062"],"corresponding_institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210113665"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5577,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.65120099,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"20","first_page":"2875","last_page":"2882"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6779651641845703},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.6371156573295593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5852747559547424},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48126620054244995},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33901187777519226},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2803792655467987},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2541363835334778},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.16626766324043274}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6779651641845703},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.6371156573295593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5852747559547424},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48126620054244995},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33901187777519226},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2803792655467987},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2541363835334778},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.16626766324043274},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012486","descriptor_name":"Salmonella typhimurium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012486","descriptor_name":"Salmonella typhimurium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012486","descriptor_name":"Salmonella typhimurium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016962","descriptor_name":"Sinorhizobium meliloti","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016962","descriptor_name":"Sinorhizobium meliloti","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016962","descriptor_name":"Sinorhizobium meliloti","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu398","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu398","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/20/2875/48929875/bioinformatics_30_20_2875.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24958812","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24958812","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digibug.ugr.es:10481/101112","is_oa":false,"landing_page_url":"https://hdl.handle.net/10481/101112","pdf_url":null,"source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"AM"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu398","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu398","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/20/2875/48929875/bioinformatics_30_20_2875.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4399999976158142,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1969480602.pdf","grobid_xml":"https://content.openalex.org/works/W1969480602.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W576104647","https://openalex.org/W1494019191","https://openalex.org/W1542426682","https://openalex.org/W1595498733","https://openalex.org/W1605441808","https://openalex.org/W1627230931","https://openalex.org/W1822105579","https://openalex.org/W1872483787","https://openalex.org/W1911720761","https://openalex.org/W1969013932","https://openalex.org/W1987139333","https://openalex.org/W1992770777","https://openalex.org/W1996423252","https://openalex.org/W1998837653","https://openalex.org/W1999339753","https://openalex.org/W2005435213","https://openalex.org/W2016961011","https://openalex.org/W2018216725","https://openalex.org/W2027941418","https://openalex.org/W2039925764","https://openalex.org/W2040110347","https://openalex.org/W2042881722","https://openalex.org/W2045395230","https://openalex.org/W2046374424","https://openalex.org/W2046413881","https://openalex.org/W2055043387","https://openalex.org/W2056145119","https://openalex.org/W2062896692","https://openalex.org/W2063681612","https://openalex.org/W2078739770","https://openalex.org/W2082644333","https://openalex.org/W2088938573","https://openalex.org/W2093789041","https://openalex.org/W2096049571","https://openalex.org/W2104104017","https://openalex.org/W2105129830","https://openalex.org/W2107870682","https://openalex.org/W2113320904","https://openalex.org/W2117843745","https://openalex.org/W2124605447","https://openalex.org/W2126105956","https://openalex.org/W2131330686","https://openalex.org/W2134412337","https://openalex.org/W2135744905","https://openalex.org/W2137677639","https://openalex.org/W2140302584","https://openalex.org/W2141157874","https://openalex.org/W2141562981","https://openalex.org/W2142926390","https://openalex.org/W2144362290","https://openalex.org/W2148925122","https://openalex.org/W2150145676","https://openalex.org/W2151007096","https://openalex.org/W2152267201","https://openalex.org/W2156735965","https://openalex.org/W2156938625","https://openalex.org/W2170401183","https://openalex.org/W2309693750","https://openalex.org/W2491339986","https://openalex.org/W3027662114","https://openalex.org/W6636160900","https://openalex.org/W6636526798","https://openalex.org/W6639885857","https://openalex.org/W6664722098","https://openalex.org/W6722674269"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
