{"id":"https://openalex.org/W2144013672","doi":"https://doi.org/10.1093/bioinformatics/btu337","title":"Memory-efficient RNA energy landscape exploration","display_name":"Memory-efficient RNA energy landscape exploration","publication_year":2014,"publication_date":"2014-05-14","ids":{"openalex":"https://openalex.org/W2144013672","doi":"https://doi.org/10.1093/bioinformatics/btu337","mag":"2144013672","pmid":"https://pubmed.ncbi.nlm.nih.gov/24833804"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu337","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2584/48929306/bioinformatics_30_18_2584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2584/48929306/bioinformatics_30_18_2584.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113973023","display_name":"Martin Mann","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]},{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]}],"countries":["AT","DE"],"is_corresponding":true,"raw_author_name":"Martin Mann","raw_affiliation_strings":["1 Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg, Germany, 2 Institute for Theoretical Chemistry, University of Vienna, 1090 Vienna, 3 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, and 4 Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, A-1030 Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg, Germany, 2 Institute for Theoretical Chemistry, University of Vienna, 1090 Vienna, 3 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, and 4 Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I2802916955","https://openalex.org/I76134821","https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017850074","display_name":"Marcel Kuchar\u00edk","orcid":"https://orcid.org/0000-0002-5373-8282"},"institutions":[{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Marcel Kuchar\u00edk","raw_affiliation_strings":["1 Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg, Germany, 2 Institute for Theoretical Chemistry, University of Vienna, 1090 Vienna, 3 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, and 4 Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, A-1030 Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg, Germany, 2 Institute for Theoretical Chemistry, University of Vienna, 1090 Vienna, 3 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, and 4 Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I2802916955","https://openalex.org/I76134821","https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005564950","display_name":"Christoph Flamm","orcid":"https://orcid.org/0000-0001-5500-2415"},"institutions":[{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Christoph Flamm","raw_affiliation_strings":["1 Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg, Germany, 2 Institute for Theoretical Chemistry, University of Vienna, 1090 Vienna, 3 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, and 4 Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, A-1030 Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg, Germany, 2 Institute for Theoretical Chemistry, University of Vienna, 1090 Vienna, 3 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, and 4 Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I2802916955","https://openalex.org/I76134821","https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052103875","display_name":"Michael T. Wolfinger","orcid":"https://orcid.org/0000-0003-0925-5205"},"institutions":[{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Michael T. Wolfinger","raw_affiliation_strings":["1 Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg, Germany, 2 Institute for Theoretical Chemistry, University of Vienna, 1090 Vienna, 3 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, and 4 Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, A-1030 Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg, Germany, 2 Institute for Theoretical Chemistry, University of Vienna, 1090 Vienna, 3 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, and 4 Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I2802916955","https://openalex.org/I76134821","https://openalex.org/I161046081"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5113973023"],"corresponding_institution_ids":["https://openalex.org/I161046081","https://openalex.org/I2802916955","https://openalex.org/I76134821"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":2730,"currency":"EUR","value_usd":2944},"fwci":0.5704,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.68081011,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"30","issue":"18","first_page":"2584","last_page":"2591"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/energy-landscape","display_name":"Energy landscape","score":0.756920337677002},{"id":"https://openalex.org/keywords/macro","display_name":"Macro","score":0.6788837313652039},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6736335754394531},{"id":"https://openalex.org/keywords/parallelizable-manifold","display_name":"Parallelizable manifold","score":0.5113760828971863},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5071065425872803},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.49528971314430237},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49323052167892456},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.4767376184463501},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.4730238914489746},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.4426831007003784},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.4297182261943817},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.33786505460739136},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.26612722873687744},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.17844080924987793},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16361713409423828},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16247189044952393},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1392468810081482},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13009285926818848}],"concepts":[{"id":"https://openalex.org/C119621388","wikidata":"https://www.wikidata.org/wiki/Q5377166","display_name":"Energy landscape","level":2,"score":0.756920337677002},{"id":"https://openalex.org/C166955791","wikidata":"https://www.wikidata.org/wiki/Q629579","display_name":"Macro","level":2,"score":0.6788837313652039},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6736335754394531},{"id":"https://openalex.org/C148047603","wikidata":"https://www.wikidata.org/wiki/Q1014612","display_name":"Parallelizable manifold","level":2,"score":0.5113760828971863},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5071065425872803},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.49528971314430237},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49323052167892456},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.4767376184463501},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.4730238914489746},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.4426831007003784},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.4297182261943817},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.33786505460739136},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.26612722873687744},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.17844080924987793},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16361713409423828},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16247189044952393},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1392468810081482},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13009285926818848},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btu337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu337","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2584/48929306/bioinformatics_30_18_2584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24833804","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24833804","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1404.0270","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1404.0270","pdf_url":"https://arxiv.org/pdf/1404.0270","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.751.9946","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.751.9946","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/1404.0270.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.866.7014","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.866.7014","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2014/05/14/bioinformatics.btu337.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3127137","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4155248","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu337","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2584/48929306/bioinformatics_30_18_2584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8899999856948853,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"},{"id":"https://openalex.org/F4320321691","display_name":"Universit\u00e4t Wien","ror":"https://ror.org/03prydq77"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144013672.pdf","grobid_xml":"https://content.openalex.org/works/W2144013672.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W56340226","https://openalex.org/W107776513","https://openalex.org/W1497560045","https://openalex.org/W1543796220","https://openalex.org/W1574590441","https://openalex.org/W1600948446","https://openalex.org/W1969903391","https://openalex.org/W1995612793","https://openalex.org/W1995945562","https://openalex.org/W2001307989","https://openalex.org/W2016461726","https://openalex.org/W2017302704","https://openalex.org/W2018483756","https://openalex.org/W2022548641","https://openalex.org/W2025746238","https://openalex.org/W2029823891","https://openalex.org/W2030492311","https://openalex.org/W2037489373","https://openalex.org/W2037597038","https://openalex.org/W2042948449","https://openalex.org/W2051713039","https://openalex.org/W2053474750","https://openalex.org/W2058510025","https://openalex.org/W2061088630","https://openalex.org/W2068462102","https://openalex.org/W2073853984","https://openalex.org/W2074974137","https://openalex.org/W2077064224","https://openalex.org/W2085266415","https://openalex.org/W2086561953","https://openalex.org/W2087401239","https://openalex.org/W2090243909","https://openalex.org/W2096883982","https://openalex.org/W2097924797","https://openalex.org/W2113368761","https://openalex.org/W2126244322","https://openalex.org/W2138059105","https://openalex.org/W2153766974","https://openalex.org/W2164408046","https://openalex.org/W2166090045","https://openalex.org/W2312579100","https://openalex.org/W2320434706","https://openalex.org/W2751555667","https://openalex.org/W3098747943","https://openalex.org/W3100558258","https://openalex.org/W3122583070","https://openalex.org/W3139860299","https://openalex.org/W4205747222","https://openalex.org/W4285719527","https://openalex.org/W6602307378","https://openalex.org/W6604410873","https://openalex.org/W6635990290"],"related_works":["https://openalex.org/W4285069850","https://openalex.org/W1974634278","https://openalex.org/W4240963716","https://openalex.org/W2891970004","https://openalex.org/W4301075503","https://openalex.org/W1596637634","https://openalex.org/W1996916724","https://openalex.org/W2321918740","https://openalex.org/W2900794160","https://openalex.org/W4288096837"],"abstract_inverted_index":{"Source":[0],"code":[1],"is":[2],"part":[3],"of":[4],"the":[5],"C++":[6],"Energy":[7],"Landscape":[8],"Library":[9],"available":[10],"at":[11],"http://www.bioinf.uni-freiburg.de/Software/.":[12]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
