{"id":"https://openalex.org/W2098339479","doi":"https://doi.org/10.1093/bioinformatics/btu308","title":"RNASeqGUI: a GUI for analysing RNA-Seq data","display_name":"RNASeqGUI: a GUI for analysing RNA-Seq data","publication_year":2014,"publication_date":"2014-05-07","ids":{"openalex":"https://openalex.org/W2098339479","doi":"https://doi.org/10.1093/bioinformatics/btu308","mag":"2098339479","pmid":"https://pubmed.ncbi.nlm.nih.gov/24812338"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu308","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu308","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2514/48927423/bioinformatics_30_17_2514.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2514/48927423/bioinformatics_30_17_2514.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101407186","display_name":"Francesco Russo","orcid":"https://orcid.org/0000-0002-7017-8344"},"institutions":[{"id":"https://openalex.org/I4210106125","display_name":"Istituto per le Applicazioni del Calcolo Mauro Picone","ror":"https://ror.org/00ygy3d85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210106125","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Francesco Russo","raw_affiliation_strings":["1Istituto per le Applicazoni del Calcolo, CNR, 80131, Napoli, Italy"],"affiliations":[{"raw_affiliation_string":"1Istituto per le Applicazoni del Calcolo, CNR, 80131, Napoli, Italy","institution_ids":["https://openalex.org/I4210106125"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001046703","display_name":"Claudia Angelini","orcid":"https://orcid.org/0000-0001-8350-8464"},"institutions":[{"id":"https://openalex.org/I4210106125","display_name":"Istituto per le Applicazioni del Calcolo Mauro Picone","ror":"https://ror.org/00ygy3d85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210106125","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Claudia Angelini","raw_affiliation_strings":["1Istituto per le Applicazoni del Calcolo, CNR, 80131, Napoli, Italy"],"affiliations":[{"raw_affiliation_string":"1Istituto per le Applicazoni del Calcolo, CNR, 80131, Napoli, Italy","institution_ids":["https://openalex.org/I4210106125"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101407186"],"corresponding_institution_ids":["https://openalex.org/I4210106125"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4162,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.89279894,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"17","first_page":"2514","last_page":"2516"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8990538120269775},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.8509564399719238},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7707418203353882},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.7521429061889648},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7190428972244263},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.6139874458312988},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5879952907562256},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.5744057297706604},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5693214535713196},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5393573641777039},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.5064247846603394},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.5021493434906006},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.46177446842193604},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3863353729248047},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.369382381439209},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3121984004974365},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27498865127563477},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2620910406112671},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07058003544807434}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8990538120269775},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.8509564399719238},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7707418203353882},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.7521429061889648},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7190428972244263},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.6139874458312988},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5879952907562256},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.5744057297706604},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5693214535713196},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5393573641777039},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.5064247846603394},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.5021493434906006},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.46177446842193604},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3863353729248047},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.369382381439209},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3121984004974365},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27498865127563477},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2620910406112671},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07058003544807434},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu308","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu308","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2514/48927423/bioinformatics_30_17_2514.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24812338","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24812338","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu308","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu308","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2514/48927423/bioinformatics_30_17_2514.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098339479.pdf","grobid_xml":"https://content.openalex.org/works/W2098339479.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1533335653","https://openalex.org/W1546952499","https://openalex.org/W1935711581","https://openalex.org/W1989367702","https://openalex.org/W1998122962","https://openalex.org/W2021880506","https://openalex.org/W2074414424","https://openalex.org/W2101163066","https://openalex.org/W2101222094","https://openalex.org/W2107018762","https://openalex.org/W2114104545","https://openalex.org/W2120865735","https://openalex.org/W2125071323","https://openalex.org/W2130116522","https://openalex.org/W2131478115","https://openalex.org/W2140729960","https://openalex.org/W2141425631","https://openalex.org/W2145416275","https://openalex.org/W2146728635","https://openalex.org/W2152239989","https://openalex.org/W2153583721","https://openalex.org/W2154431984","https://openalex.org/W2155115337","https://openalex.org/W2156631105","https://openalex.org/W2161106528","https://openalex.org/W2168342464","https://openalex.org/W2612646889","https://openalex.org/W6647489685"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2792006949","https://openalex.org/W2098339479","https://openalex.org/W2566205467"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}