{"id":"https://openalex.org/W2151007749","doi":"https://doi.org/10.1093/bioinformatics/btu109","title":"MGDB: crossing the marker genes of a user microarray with a database of public-microarrays marker genes","display_name":"MGDB: crossing the marker genes of a user microarray with a database of public-microarrays marker genes","publication_year":2013,"publication_date":"2013-02-25","ids":{"openalex":"https://openalex.org/W2151007749","doi":"https://doi.org/10.1093/bioinformatics/btu109","mag":"2151007749","pmid":"https://pubmed.ncbi.nlm.nih.gov/24574116"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu109","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1780/9963746/btu109.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1780/9963746/btu109.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103071365","display_name":"Mario M. Carrillo Huerta","orcid":"https://orcid.org/0000-0003-1159-9509"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]},{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]}],"countries":["ES","UY"],"is_corresponding":false,"raw_author_name":"Mario Huerta","raw_affiliation_strings":["1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay","institution_ids":["https://openalex.org/I180910786","https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037100693","display_name":"Marc Munyi","orcid":null},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]},{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES","UY"],"is_corresponding":false,"raw_author_name":"Marc Munyi","raw_affiliation_strings":["1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay","institution_ids":["https://openalex.org/I180910786","https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051863535","display_name":"David Exp\u00f3sito","orcid":null},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]},{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES","UY"],"is_corresponding":false,"raw_author_name":"David Exp\u00f3sito","raw_affiliation_strings":["1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay","institution_ids":["https://openalex.org/I180910786","https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028662682","display_name":"Enric Querol","orcid":null},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]},{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]}],"countries":["ES","UY"],"is_corresponding":false,"raw_author_name":"Enric Querol","raw_affiliation_strings":["1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay","institution_ids":["https://openalex.org/I180910786","https://openalex.org/I123044942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029397880","display_name":"Juan Cedano","orcid":"https://orcid.org/0000-0003-1380-8036"},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]},{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES","UY"],"is_corresponding":true,"raw_author_name":"Juan Cedano","raw_affiliation_strings":["1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Institut de Biotecnologia i Biomedicina, 2Escola T\u00e8cnica Superior de Ingenieria, Universitat Aut\u00f2noma de Barcelona; Bellaterra, Barcelona 08193, Spain and 3Laboratorio de Inmunolog\u00eda, Universidad de la Rep\u00fablica Regional Norte-Salto, Rivera 1350, CP 50000 Salto, Uruguay","institution_ids":["https://openalex.org/I180910786","https://openalex.org/I123044942"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5029397880"],"corresponding_institution_ids":["https://openalex.org/I123044942","https://openalex.org/I180910786"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4485,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.6671053,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"30","issue":"12","first_page":"1780","last_page":"1781"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.8108812570571899},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.7723957300186157},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.7340049743652344},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.6495336890220642},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4629078805446625},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4408077597618103},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4341539144515991},{"id":"https://openalex.org/keywords/gene-chip-analysis","display_name":"Gene chip analysis","score":0.41793370246887207},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40512165427207947},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3524278998374939},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2533162236213684},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23575159907341003}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.8108812570571899},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.7723957300186157},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.7340049743652344},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.6495336890220642},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4629078805446625},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4408077597618103},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4341539144515991},{"id":"https://openalex.org/C24361400","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Gene chip analysis","level":5,"score":0.41793370246887207},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40512165427207947},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3524278998374939},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2533162236213684},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23575159907341003}],"mesh":[{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu109","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1780/9963746/btu109.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24574116","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24574116","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ddd.uab.cat:185004","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/185004","pdf_url":null,"source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4058934","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4058934","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu109","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1780/9963746/btu109.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151007749.pdf","grobid_xml":"https://content.openalex.org/works/W2151007749.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2094678200","https://openalex.org/W2101506246","https://openalex.org/W2121604817","https://openalex.org/W2143129697","https://openalex.org/W4255886388"],"related_works":["https://openalex.org/W2037383042","https://openalex.org/W2137073600","https://openalex.org/W2199718058","https://openalex.org/W2396547978","https://openalex.org/W2097822643","https://openalex.org/W2181762526","https://openalex.org/W2417887690","https://openalex.org/W2061409893","https://openalex.org/W2188514989","https://openalex.org/W2157972585"],"abstract_inverted_index":{"Marker-gene":[0],"database":[1],"tool:":[2],"http://ibb.uab.es/mgdb":[3]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-23T07:41:27.035349","created_date":"2025-10-10T00:00:00"}
