{"id":"https://openalex.org/W2137198307","doi":"https://doi.org/10.1093/bioinformatics/btu082","title":"HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization","display_name":"HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization","publication_year":2014,"publication_date":"2014-02-07","ids":{"openalex":"https://openalex.org/W2137198307","doi":"https://doi.org/10.1093/bioinformatics/btu082","mag":"2137198307","pmid":"https://pubmed.ncbi.nlm.nih.gov/24511080"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/11/1620/48928132/bioinformatics_30_11_1620.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/11/1620/48928132/bioinformatics_30_11_1620.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072856663","display_name":"Jonas Paulsen","orcid":"https://orcid.org/0000-0002-7918-5495"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Jonas Paulsen","raw_affiliation_strings":["1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054500587","display_name":"Geir Kjetil Sandve","orcid":"https://orcid.org/0000-0002-4959-1409"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Geir Kjetil Sandve","raw_affiliation_strings":["1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014990782","display_name":"Sveinung Gundersen","orcid":"https://orcid.org/0000-0001-9888-7954"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Sveinung Gundersen","raw_affiliation_strings":["1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082508483","display_name":"Tonje G. Lien","orcid":"https://orcid.org/0000-0003-3331-4201"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Tonje G. Lien","raw_affiliation_strings":["1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080024936","display_name":"Kai Trengereid","orcid":null},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Kai Trengereid","raw_affiliation_strings":["1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083493986","display_name":"Eivind Hovig","orcid":"https://orcid.org/0000-0002-9103-1077"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Eivind Hovig","raw_affiliation_strings":["1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"1 Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 2Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, 3Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, 4Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and 5ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5072856663"],"corresponding_institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.3464,"has_fulltext":false,"cited_by_count":44,"citation_normalized_percentile":{"value":0.93136332,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"11","first_page":"1620","last_page":"1622"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8383990526199341},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7257412672042847},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.6492555141448975},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5722251534461975},{"id":"https://openalex.org/keywords/chromosome-conformation-capture","display_name":"Chromosome conformation capture","score":0.5245851874351501},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5169738531112671},{"id":"https://openalex.org/keywords/chia-pet","display_name":"ChIA-PET","score":0.4780291020870209},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.44113805890083313},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.43499046564102173},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42901676893234253},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.417377233505249},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40713173151016235},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2614597976207733},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24530598521232605},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18503814935684204},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17326563596725464},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13572588562965393},{"id":"https://openalex.org/keywords/chromatin-remodeling","display_name":"Chromatin remodeling","score":0.12866586446762085},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.08537903428077698}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8383990526199341},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7257412672042847},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6492555141448975},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5722251534461975},{"id":"https://openalex.org/C93946551","wikidata":"https://www.wikidata.org/wiki/Q5113914","display_name":"Chromosome conformation capture","level":5,"score":0.5245851874351501},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5169738531112671},{"id":"https://openalex.org/C67258246","wikidata":"https://www.wikidata.org/wiki/Q5065897","display_name":"ChIA-PET","level":5,"score":0.4780291020870209},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.44113805890083313},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.43499046564102173},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42901676893234253},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.417377233505249},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40713173151016235},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2614597976207733},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24530598521232605},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18503814935684204},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17326563596725464},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13572588562965393},{"id":"https://openalex.org/C167227067","wikidata":"https://www.wikidata.org/wiki/Q5113739","display_name":"Chromatin remodeling","level":4,"score":0.12866586446762085},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.08537903428077698},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btu082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/11/1620/48928132/bioinformatics_30_11_1620.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24511080","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24511080","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3004105","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC4029040","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4029040","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4029040","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.duo.uio.no:10852/65546","is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/65546","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1367-4803","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/11/1620/48928132/bioinformatics_30_11_1620.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137198307.pdf","grobid_xml":"https://content.openalex.org/works/W2137198307.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1985621639","https://openalex.org/W2014677321","https://openalex.org/W2045259457","https://openalex.org/W2051892208","https://openalex.org/W2059472700","https://openalex.org/W2090037139","https://openalex.org/W2094160175","https://openalex.org/W2097798909","https://openalex.org/W2098651180","https://openalex.org/W2099591793","https://openalex.org/W2103925102","https://openalex.org/W2114104545","https://openalex.org/W2120718521","https://openalex.org/W2121548473","https://openalex.org/W2123226794","https://openalex.org/W2131004167","https://openalex.org/W2135407780","https://openalex.org/W2136482257","https://openalex.org/W2152516668","https://openalex.org/W2153856160","https://openalex.org/W3103944316"],"related_works":["https://openalex.org/W3116849561","https://openalex.org/W2920984778","https://openalex.org/W4223510794","https://openalex.org/W4286711918","https://openalex.org/W2170696599","https://openalex.org/W2875710971","https://openalex.org/W3197668718","https://openalex.org/W3097032002","https://openalex.org/W2806216819","https://openalex.org/W2887293316"],"abstract_inverted_index":{"HiBrowse":[0],"is":[1,8,14,21],"supported":[2],"by":[3,25],"all":[4],"major":[5],"browsers,":[6],"and":[7,18],"freely":[9],"available":[10,22],"at":[11],"http://hyperbrowser.uio.no/3d.":[12],"Software":[13],"implemented":[15],"in":[16],"Python,":[17],"source":[19],"code":[20],"for":[23],"download":[24],"following":[26],"instructions":[27],"on":[28],"the":[29],"main":[30],"site.":[31]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":8}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
