{"id":"https://openalex.org/W2148731002","doi":"https://doi.org/10.1093/bioinformatics/btt746","title":"tasiRNAdb: a database of ta-siRNA regulatory pathways","display_name":"tasiRNAdb: a database of ta-siRNA regulatory pathways","publication_year":2013,"publication_date":"2013-12-25","ids":{"openalex":"https://openalex.org/W2148731002","doi":"https://doi.org/10.1093/bioinformatics/btt746","mag":"2148731002"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt746","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt746","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100604574","display_name":"Changqing Zhang","orcid":"https://orcid.org/0000-0003-2051-0625"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I167027274","display_name":"Nanjing Forestry University","ror":"https://ror.org/03m96p165","country_code":"CN","type":"education","lineage":["https://openalex.org/I167027274"]},{"id":"https://openalex.org/I4210166603","display_name":"Jinling Institute of Technology","ror":"https://ror.org/05em1gq62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166603"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Changqing Zhang","raw_affiliation_strings":["1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China"],"affiliations":[{"raw_affiliation_string":"1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China","institution_ids":["https://openalex.org/I167027274","https://openalex.org/I4210166603","https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100771745","display_name":"Guangping Li","orcid":"https://orcid.org/0000-0003-2121-2873"},"institutions":[{"id":"https://openalex.org/I4210166603","display_name":"Jinling Institute of Technology","ror":"https://ror.org/05em1gq62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166603"]},{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I167027274","display_name":"Nanjing Forestry University","ror":"https://ror.org/03m96p165","country_code":"CN","type":"education","lineage":["https://openalex.org/I167027274"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangping Li","raw_affiliation_strings":["1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China"],"affiliations":[{"raw_affiliation_string":"1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China","institution_ids":["https://openalex.org/I167027274","https://openalex.org/I4210166603","https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113910177","display_name":"Shinong Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210166603","display_name":"Jinling Institute of Technology","ror":"https://ror.org/05em1gq62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166603"]},{"id":"https://openalex.org/I167027274","display_name":"Nanjing Forestry University","ror":"https://ror.org/03m96p165","country_code":"CN","type":"education","lineage":["https://openalex.org/I167027274"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shinong Zhu","raw_affiliation_strings":["1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China"],"affiliations":[{"raw_affiliation_string":"1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China","institution_ids":["https://openalex.org/I167027274","https://openalex.org/I4210166603","https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100450417","display_name":"Shuo Zhang","orcid":"https://orcid.org/0000-0003-4814-7055"},"institutions":[{"id":"https://openalex.org/I167027274","display_name":"Nanjing Forestry University","ror":"https://ror.org/03m96p165","country_code":"CN","type":"education","lineage":["https://openalex.org/I167027274"]},{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I4210166603","display_name":"Jinling Institute of Technology","ror":"https://ror.org/05em1gq62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166603"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuo Zhang","raw_affiliation_strings":["1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China"],"affiliations":[{"raw_affiliation_string":"1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China","institution_ids":["https://openalex.org/I167027274","https://openalex.org/I4210166603","https://openalex.org/I119454577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026199531","display_name":"Jinggui Fang","orcid":"https://orcid.org/0000-0003-1975-2715"},"institutions":[{"id":"https://openalex.org/I4210166603","display_name":"Jinling Institute of Technology","ror":"https://ror.org/05em1gq62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166603"]},{"id":"https://openalex.org/I167027274","display_name":"Nanjing Forestry University","ror":"https://ror.org/03m96p165","country_code":"CN","type":"education","lineage":["https://openalex.org/I167027274"]},{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinggui Fang","raw_affiliation_strings":["1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China"],"affiliations":[{"raw_affiliation_string":"1 College of Horticulture, Jinling Institute of Technology, Nanjing 210038, China, 2College of Forest Resources and Environment, Nanjing Forestry University, Nanjing 210037, China and 3College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China","institution_ids":["https://openalex.org/I167027274","https://openalex.org/I4210166603","https://openalex.org/I119454577"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100604574"],"corresponding_institution_ids":["https://openalex.org/I119454577","https://openalex.org/I167027274","https://openalex.org/I4210166603"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.9971,"has_fulltext":false,"cited_by_count":57,"citation_normalized_percentile":{"value":0.94712364,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"7","first_page":"1045","last_page":"1046"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11927","display_name":"Plant Reproductive Biology","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/small-interfering-rna","display_name":"Small interfering RNA","score":0.756239116191864},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6209446787834167},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6118597388267517},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.5475406050682068},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.524468183517456},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45896387100219727},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.4524300694465637},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.437518835067749},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4333385229110718},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29731491208076477},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.23009952902793884}],"concepts":[{"id":"https://openalex.org/C22615655","wikidata":"https://www.wikidata.org/wiki/Q203221","display_name":"Small interfering RNA","level":4,"score":0.756239116191864},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6209446787834167},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6118597388267517},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.5475406050682068},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.524468183517456},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45896387100219727},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.4524300694465637},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.437518835067749},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4333385229110718},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29731491208076477},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.23009952902793884}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/btt746","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt746","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W2018308196","https://openalex.org/W2050773270","https://openalex.org/W2062300017","https://openalex.org/W2063416247","https://openalex.org/W2099660828","https://openalex.org/W2110105078","https://openalex.org/W2111434558","https://openalex.org/W2123846805","https://openalex.org/W2124132148","https://openalex.org/W2139582953","https://openalex.org/W2149639534","https://openalex.org/W2160264339","https://openalex.org/W2171116394"],"related_works":["https://openalex.org/W2117817585","https://openalex.org/W2185879893","https://openalex.org/W1525478498","https://openalex.org/W2781560586","https://openalex.org/W2322288828","https://openalex.org/W1727594","https://openalex.org/W2075106432","https://openalex.org/W2374724382","https://openalex.org/W84622264","https://openalex.org/W3199951662"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"In":[2],"plants,":[3],"many":[4],"trans-acting":[5],"small":[6,115],"interfering":[7],"RNA":[8,116],"(ta-siRNA)":[9],"regulatory":[10,50,69,98,140],"pathways":[11,86,99,141],"have":[12],"been":[13],"identified":[14],"as":[15,61],"significant":[16],"components":[17],"of":[18,48,67,137],"the":[19,36,46,65,79,92],"gene":[20],"networks":[21],"involved":[22],"in":[23],"development,":[24],"metabolism,":[25],"responses":[26],"to":[27,59,112,120,125],"biotic":[28],"and":[29,32,74,77,117,124,130],"abiotic":[30],"stresses":[31],"DNA":[33],"methylation":[34],"at":[35,144,154],"TAS":[37,123,131],"locus.":[38],"To":[39],"obtain":[40],"a":[41,54,62,105,121],"more":[42],"comprehensive":[43],"understanding":[44],"on":[45],"nature":[47],"ta-siRNA":[49,68,75,97,139],"pathways,":[51],"we":[52],"developed":[53,111],"freely":[55],"accessible":[56],"resource,":[57],"tasiRNAdb,":[58],"serve":[60],"repository":[63],"for":[64,78,95],"sequences":[66],"pathway-related":[70],"microRNAs,":[71],"TASs,":[72],"ta-siRNAs":[73],"targets,":[76],"cascading":[80],"relations":[81],"among":[82],"them.":[83],"With":[84],"583":[85],"from":[87],"18":[88],"species,":[89],"tasiRNAdb":[90,102],"is":[91,142],"largest":[93],"resource":[94],"known":[96],"currently":[100],"available.":[101],"also":[103],"provides":[104],"tool":[106],"named":[107],"TasExpAnalysis":[108],"that":[109],"was":[110],"map":[113],"user-submitted":[114],"degradome":[118],"libraries":[119],"stored/input":[122],"perform":[126],"sRNA":[127],"phasing":[128],"analysis":[129],"cleavage":[132],"analysis.":[133],"Availability:":[134],"The":[135],"database":[136],"plant":[138],"available":[143,153],"http://bioinfo.jit.edu.cn/tasiRNADatabase/.":[145],"Contact:":[146],"zhang_chq2002@sohu.com":[147],"Supplementary":[148,150],"information:":[149],"data":[151],"are":[152],"Bioinformatics":[155],"online.":[156]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
