{"id":"https://openalex.org/W2167111563","doi":"https://doi.org/10.1093/bioinformatics/btt727","title":"SigHunt: horizontal gene transfer finder optimized for eukaryotic genomes","display_name":"SigHunt: horizontal gene transfer finder optimized for eukaryotic genomes","publication_year":2013,"publication_date":"2013-12-25","ids":{"openalex":"https://openalex.org/W2167111563","doi":"https://doi.org/10.1093/bioinformatics/btt727","mag":"2167111563","pmid":"https://pubmed.ncbi.nlm.nih.gov/24371153"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt727","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt727","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1081/48922529/bioinformatics_30_8_1081.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1081/48922529/bioinformatics_30_8_1081.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003894975","display_name":"Kamil S. Jaro\u0148","orcid":"https://orcid.org/0000-0003-1470-5450"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210144542","display_name":"Czech Academy of Sciences, Institute of Vertebrate Biology","ror":"https://ror.org/05bcgdd94","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210144542"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Kamil S. Jaron","raw_affiliation_strings":["1 Institute of Biostatistics and Analyses, Masaryk University and 2Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"1 Institute of Biostatistics and Analyses, Masaryk University and 2Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210144542","https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024808613","display_name":"Ji\u0159\u00ed C. Moravec","orcid":"https://orcid.org/0000-0002-3651-1924"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210144542","display_name":"Czech Academy of Sciences, Institute of Vertebrate Biology","ror":"https://ror.org/05bcgdd94","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210144542"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ji\u0159\u00ed C. Moravec","raw_affiliation_strings":["1 Institute of Biostatistics and Analyses, Masaryk University and 2Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"1 Institute of Biostatistics and Analyses, Masaryk University and 2Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210144542","https://openalex.org/I21449261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078861702","display_name":"Nat\u00e1lia Mart\u00ednkov\u00e1","orcid":"https://orcid.org/0000-0003-4556-4363"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210144542","display_name":"Czech Academy of Sciences, Institute of Vertebrate Biology","ror":"https://ror.org/05bcgdd94","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210144542"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Nat\u00e1lia Mart\u00ednkov\u00e1","raw_affiliation_strings":["1 Institute of Biostatistics and Analyses, Masaryk University and 2Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"1 Institute of Biostatistics and Analyses, Masaryk University and 2Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Brno, Czech Republic","institution_ids":["https://openalex.org/I4210144542","https://openalex.org/I21449261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5003894975"],"corresponding_institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210144542"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4464,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.66702138,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"30","issue":"8","first_page":"1081","last_page":"1086"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7478532195091248},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5851345062255859},{"id":"https://openalex.org/keywords/sliding-window-protocol","display_name":"Sliding window protocol","score":0.5385075807571411},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4678633511066437},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.408914178609848},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39036622643470764},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38199982047080994},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3314785063266754},{"id":"https://openalex.org/keywords/window","display_name":"Window (computing)","score":0.2524232864379883}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7478532195091248},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5851345062255859},{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.5385075807571411},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4678633511066437},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.408914178609848},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39036622643470764},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38199982047080994},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3314785063266754},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.2524232864379883},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044404","descriptor_name":"Genomic Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044404","descriptor_name":"Genomic Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044404","descriptor_name":"Genomic Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt727","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt727","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1081/48922529/bioinformatics_30_8_1081.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24371153","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24371153","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:asep.lib.cas.cz:CavUnEpca/0422473","is_oa":false,"landing_page_url":"http://hdl.handle.net/11104/0228726","pdf_url":null,"source":{"id":"https://openalex.org/S7407055266","display_name":"ASEP","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt727","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt727","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1081/48922529/bioinformatics_30_8_1081.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"},{"id":"https://openalex.org/F4320326548","display_name":"Masarykova Univerzita","ror":"https://ror.org/02j46qs45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167111563.pdf","grobid_xml":"https://content.openalex.org/works/W2167111563.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1505376259","https://openalex.org/W1936630560","https://openalex.org/W1971452678","https://openalex.org/W2001554597","https://openalex.org/W2006617902","https://openalex.org/W2042286802","https://openalex.org/W2048603839","https://openalex.org/W2053313302","https://openalex.org/W2069712815","https://openalex.org/W2083922582","https://openalex.org/W2090384119","https://openalex.org/W2100278941","https://openalex.org/W2103103799","https://openalex.org/W2108228587","https://openalex.org/W2108313755","https://openalex.org/W2110141882","https://openalex.org/W2113826143","https://openalex.org/W2124817677","https://openalex.org/W2126373564","https://openalex.org/W2126763121","https://openalex.org/W2128984258","https://openalex.org/W2138676891","https://openalex.org/W2140211206","https://openalex.org/W2140674122","https://openalex.org/W2141652419","https://openalex.org/W2145126338","https://openalex.org/W2145573696","https://openalex.org/W2150864606","https://openalex.org/W2153139855","https://openalex.org/W2153283265","https://openalex.org/W2167719208","https://openalex.org/W2582743722"],"related_works":["https://openalex.org/W2002128513","https://openalex.org/W2092874662","https://openalex.org/W2171277769","https://openalex.org/W1991523530","https://openalex.org/W2020824267","https://openalex.org/W2057739827","https://openalex.org/W2075354549","https://openalex.org/W2187207551","https://openalex.org/W2069184423","https://openalex.org/W1603543036"],"abstract_inverted_index":{"376090@mail.muni.cz":[0],"or":[1],"martinkova@ivb.cz.":[2]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3}],"updated_date":"2026-03-06T13:50:29.536080","created_date":"2025-10-10T00:00:00"}
