{"id":"https://openalex.org/W2146628513","doi":"https://doi.org/10.1093/bioinformatics/btt709","title":"Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection","display_name":"Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection","publication_year":2013,"publication_date":"2013-12-05","ids":{"openalex":"https://openalex.org/W2146628513","doi":"https://doi.org/10.1093/bioinformatics/btt709","mag":"2146628513","pmid":"https://pubmed.ncbi.nlm.nih.gov/24318998"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt709","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/4/472/48918254/bioinformatics_30_4_472.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/4/472/48918254/bioinformatics_30_4_472.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100395591","display_name":"Bin Liu","orcid":"https://orcid.org/0000-0003-3685-9469"},"institutions":[{"id":"https://openalex.org/I125904092","display_name":"Shenyang Aerospace University","ror":"https://ror.org/02423gm04","country_code":"CN","type":"education","lineage":["https://openalex.org/I125904092"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bin Liu","raw_affiliation_strings":["School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052015929","display_name":"Deyuan Zhang","orcid":"https://orcid.org/0000-0002-4731-7211"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I125904092","display_name":"Shenyang Aerospace University","ror":"https://ror.org/02423gm04","country_code":"CN","type":"education","lineage":["https://openalex.org/I125904092"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Deyuan Zhang","raw_affiliation_strings":["School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026719663","display_name":"Ruifeng Xu","orcid":"https://orcid.org/0000-0002-4009-5679"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I125904092","display_name":"Shenyang Aerospace University","ror":"https://ror.org/02423gm04","country_code":"CN","type":"education","lineage":["https://openalex.org/I125904092"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruifeng Xu","raw_affiliation_strings":["School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015689951","display_name":"Jinghao Xu","orcid":"https://orcid.org/0009-0005-1638-3661"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I125904092","display_name":"Shenyang Aerospace University","ror":"https://ror.org/02423gm04","country_code":"CN","type":"education","lineage":["https://openalex.org/I125904092"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinghao Xu","raw_affiliation_strings":["School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100424254","display_name":"Xiaolong Wang","orcid":"https://orcid.org/0000-0001-9003-4252"},"institutions":[{"id":"https://openalex.org/I125904092","display_name":"Shenyang Aerospace University","ror":"https://ror.org/02423gm04","country_code":"CN","type":"education","lineage":["https://openalex.org/I125904092"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolong Wang","raw_affiliation_strings":["School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101895423","display_name":"Qingcai Chen","orcid":"https://orcid.org/0000-0001-8473-7293"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I125904092","display_name":"Shenyang Aerospace University","ror":"https://ror.org/02423gm04","country_code":"CN","type":"education","lineage":["https://openalex.org/I125904092"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingcai Chen","raw_affiliation_strings":["School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100608345","display_name":"Qiwen Dong","orcid":"https://orcid.org/0000-0002-3166-0541"},"institutions":[{"id":"https://openalex.org/I125904092","display_name":"Shenyang Aerospace University","ror":"https://ror.org/02423gm04","country_code":"CN","type":"education","lineage":["https://openalex.org/I125904092"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiwen Dong","raw_affiliation_strings":["School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113500576","display_name":"Kuo\u2010Chen Chou","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I125904092","display_name":"Shenyang Aerospace University","ror":"https://ror.org/02423gm04","country_code":"CN","type":"education","lineage":["https://openalex.org/I125904092"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kuo-Chen Chou","raw_affiliation_strings":["School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and 2Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong 518055, China, 3Shanghai Key Laboratory of Intelligent Information Processing, Shanghai 200433, China, 4Gordon Life Science Institute, Belmont, MA 02478, USA, 5School of Computer, Shenyang Aerospace University, Shenyang, Liaoning, China, 6School of Computer Science, Fudan University, Shanghai 200433, China and 7Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5100395591"],"corresponding_institution_ids":["https://openalex.org/I125904092","https://openalex.org/I24943067"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":20.2154,"has_fulltext":true,"cited_by_count":274,"citation_normalized_percentile":{"value":0.99655094,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"30","issue":"4","first_page":"472","last_page":"479"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7253950834274292},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6552228927612305},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6535530686378479},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4901362359523773},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.4886205792427063},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4794834554195404},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.4758065342903137},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4552142322063446},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4529702365398407},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.4431619346141815},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.43909263610839844},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4389282166957855},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4159679114818573},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4092150330543518},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37909260392189026},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3789282739162445},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3634381592273712},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18314379453659058},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.15391060709953308},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1192830502986908},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09548914432525635}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7253950834274292},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6552228927612305},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6535530686378479},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4901362359523773},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.4886205792427063},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4794834554195404},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.4758065342903137},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4552142322063446},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4529702365398407},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.4431619346141815},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.43909263610839844},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4389282166957855},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4159679114818573},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4092150330543518},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37909260392189026},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3789282739162445},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3634381592273712},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18314379453659058},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.15391060709953308},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1192830502986908},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09548914432525635},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009419","descriptor_name":"Nerve Tissue Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009419","descriptor_name":"Nerve Tissue Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009419","descriptor_name":"Nerve Tissue Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019925","descriptor_name":"Cyclin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019925","descriptor_name":"Cyclin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019925","descriptor_name":"Cyclin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt709","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/4/472/48918254/bioinformatics_30_4_472.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24318998","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24318998","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7537947","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7537947","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt709","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/4/472/48918254/bioinformatics_30_4_472.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1291539648","display_name":null,"funder_award_id":"61370165","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1474356259","display_name":null,"funder_award_id":"HIT.NSRIF.2013103","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1477544716","display_name":null,"funder_award_id":"Guangdong","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1602692349","display_name":null,"funder_award_id":"201204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1947349151","display_name":null,"funder_award_id":"S2013010014475","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G227858465","display_name":null,"funder_award_id":"201301","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2350075274","display_name":null,"funder_award_id":"61272383","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2656464209","display_name":null,"funder_award_id":"61370010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3741614218","display_name":null,"funder_award_id":"2013010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4223018868","display_name":null,"funder_award_id":"61173075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4451027671","display_name":null,"funder_award_id":"S2012040007390","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"},{"id":"https://openalex.org/G5848258319","display_name":null,"funder_award_id":"0 and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6029495371","display_name":null,"funder_award_id":"HIT.NSRIF","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7339505010","display_name":null,"funder_award_id":"IIPL-2012-002","funder_id":"https://openalex.org/F4320332588","funder_display_name":"Shanghai Key Laboratory of Intelligent Information Processing"},{"id":"https://openalex.org/G7696875419","display_name":null,"funder_award_id":"61300112","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8224011125","display_name":null,"funder_award_id":"IIPL-2012-002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8305111703","display_name":null,"funder_award_id":"S2012040007390","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null},{"id":"https://openalex.org/F4320321940","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08"},{"id":"https://openalex.org/F4320332588","display_name":"Shanghai Key Laboratory of Intelligent Information Processing","ror":"https://ror.org/013q1eq08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146628513.pdf","grobid_xml":"https://content.openalex.org/works/W2146628513.grobid-xml"},"referenced_works_count":74,"referenced_works":["https://openalex.org/W1913728360","https://openalex.org/W1944448017","https://openalex.org/W1965749072","https://openalex.org/W1967606544","https://openalex.org/W1967680767","https://openalex.org/W1973714307","https://openalex.org/W1975394843","https://openalex.org/W1979754886","https://openalex.org/W1979981221","https://openalex.org/W1980256262","https://openalex.org/W1980865425","https://openalex.org/W1981532526","https://openalex.org/W1985718285","https://openalex.org/W1987904880","https://openalex.org/W1989751871","https://openalex.org/W1995918845","https://openalex.org/W2016319093","https://openalex.org/W2025775541","https://openalex.org/W2026710881","https://openalex.org/W2033720851","https://openalex.org/W2034070267","https://openalex.org/W2034115630","https://openalex.org/W2036329916","https://openalex.org/W2038873127","https://openalex.org/W2042507562","https://openalex.org/W2042667521","https://openalex.org/W2042740064","https://openalex.org/W2043338013","https://openalex.org/W2052514400","https://openalex.org/W2053160247","https://openalex.org/W2055043387","https://openalex.org/W2056192318","https://openalex.org/W2072294105","https://openalex.org/W2073223847","https://openalex.org/W2075176419","https://openalex.org/W2084787613","https://openalex.org/W2085140422","https://openalex.org/W2087064593","https://openalex.org/W2089989707","https://openalex.org/W2095692770","https://openalex.org/W2102354653","https://openalex.org/W2103881408","https://openalex.org/W2104983234","https://openalex.org/W2105259921","https://openalex.org/W2107539619","https://openalex.org/W2108079689","https://openalex.org/W2109872885","https://openalex.org/W2110115297","https://openalex.org/W2112815320","https://openalex.org/W2114024619","https://openalex.org/W2116420909","https://openalex.org/W2117502874","https://openalex.org/W2121950477","https://openalex.org/W2127069950","https://openalex.org/W2132292391","https://openalex.org/W2140244239","https://openalex.org/W2142013909","https://openalex.org/W2145268834","https://openalex.org/W2145358391","https://openalex.org/W2145957695","https://openalex.org/W2148279834","https://openalex.org/W2148603752","https://openalex.org/W2151935677","https://openalex.org/W2155792813","https://openalex.org/W2158714788","https://openalex.org/W2161621183","https://openalex.org/W2161732286","https://openalex.org/W2170960297","https://openalex.org/W2172162168","https://openalex.org/W2320157085","https://openalex.org/W2559997609","https://openalex.org/W2913668833","https://openalex.org/W6640526699","https://openalex.org/W6678995930"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2804480386","https://openalex.org/W3186624150","https://openalex.org/W65850283"],"abstract_inverted_index":{"For":[0],"users'":[1],"convenience,":[2],"the":[3,8,12],"source":[4],"code":[5],"of":[6],"generating":[7],"profile-based":[9],"proteins":[10],"and":[11],"multiple":[13],"kernel":[14],"learning":[15],"was":[16],"also":[17],"provided":[18],"at":[19],"http://bioinformatics.hitsz.edu.cn/main/~binliu/remote/":[20]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":33},{"year":2017,"cited_by_count":45},{"year":2016,"cited_by_count":52},{"year":2015,"cited_by_count":39},{"year":2014,"cited_by_count":44}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
