{"id":"https://openalex.org/W2118770646","doi":"https://doi.org/10.1093/bioinformatics/btt592","title":"gCMAP: user-friendly connectivity mapping with R","display_name":"gCMAP: user-friendly connectivity mapping with R","publication_year":2013,"publication_date":"2013-10-15","ids":{"openalex":"https://openalex.org/W2118770646","doi":"https://doi.org/10.1093/bioinformatics/btt592","mag":"2118770646","pmid":"https://pubmed.ncbi.nlm.nih.gov/24132929"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt592","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt592","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/127/48912479/bioinformatics_30_1_127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/127/48912479/bioinformatics_30_1_127.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010988071","display_name":"Thomas Sandmann","orcid":"https://orcid.org/0000-0002-6601-8890"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Thomas Sandmann","raw_affiliation_strings":["Department of Bioinformatics and Computational Biology, Genentech Inc., South San Francisco, CA 94080, USA","Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA 94080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, Genentech Inc., South San Francisco, CA 94080, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA 94080, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053299894","display_name":"Sarah Kummerfeld","orcid":"https://orcid.org/0000-0002-0089-2358"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sarah K. Kummerfeld","raw_affiliation_strings":["Department of Bioinformatics and Computational Biology, Genentech Inc., South San Francisco, CA 94080, USA","Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA 94080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, Genentech Inc., South San Francisco, CA 94080, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA 94080, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039040940","display_name":"Robert Gentleman","orcid":"https://orcid.org/0000-0003-4505-9893"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Gentleman","raw_affiliation_strings":["Department of Bioinformatics and Computational Biology, Genentech Inc., South San Francisco, CA 94080, USA","Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA 94080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, Genentech Inc., South San Francisco, CA 94080, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA 94080, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009855982","display_name":"Richard Bourgon","orcid":"https://orcid.org/0000-0002-5890-4374"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Richard Bourgon","raw_affiliation_strings":["Department of Bioinformatics and Computational Biology, Genentech Inc., South San Francisco, CA 94080, USA","Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA 94080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, Genentech Inc., South San Francisco, CA 94080, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA 94080, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010988071"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1697,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.78404834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"30","issue":"1","first_page":"127","last_page":"128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9402599334716797},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.8659734129905701},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7133125066757202},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.5635871887207031},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4972591698169708},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4895494878292084},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4813311994075775},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4206825792789459},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34362778067588806},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3412284851074219},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.33603140711784363},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22015786170959473},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19693416357040405},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19026899337768555},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12448358535766602},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08150923252105713}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9402599334716797},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.8659734129905701},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7133125066757202},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.5635871887207031},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4972591698169708},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4895494878292084},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4813311994075775},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4206825792789459},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34362778067588806},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3412284851074219},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.33603140711784363},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22015786170959473},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19693416357040405},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19026899337768555},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12448358535766602},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08150923252105713},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt592","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt592","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/127/48912479/bioinformatics_30_1_127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24132929","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24132929","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt592","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt592","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/127/48912479/bioinformatics_30_1_127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118770646.pdf","grobid_xml":"https://content.openalex.org/works/W2118770646.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1982342651","https://openalex.org/W1982606752","https://openalex.org/W2007946753","https://openalex.org/W2040676413","https://openalex.org/W2081098333","https://openalex.org/W2095900642","https://openalex.org/W2099582158","https://openalex.org/W2105022693","https://openalex.org/W2110762994","https://openalex.org/W2121604817","https://openalex.org/W2128054164","https://openalex.org/W2130410032","https://openalex.org/W2140556695","https://openalex.org/W2152239989","https://openalex.org/W2163067316","https://openalex.org/W2163086529"],"related_works":["https://openalex.org/W634263678","https://openalex.org/W2501958676","https://openalex.org/W605022873","https://openalex.org/W586125253","https://openalex.org/W1769567533","https://openalex.org/W2333003759","https://openalex.org/W2471374216","https://openalex.org/W1603220108","https://openalex.org/W2482337249","https://openalex.org/W1698445912"],"abstract_inverted_index":{"The":[0],"gCMAP":[1],"and":[2,12],"gCMAPWeb":[3],"R":[4],"packages":[5],"are":[6],"freely":[7],"available":[8],"for":[9],"UNIX,":[10],"Windows":[11],"Mac":[13],"OS":[14],"X":[15],"operating":[16],"systems":[17],"at":[18],"Bioconductor":[19],"(http://www.bioconductor.org).":[20]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
