{"id":"https://openalex.org/W2158477452","doi":"https://doi.org/10.1093/bioinformatics/btt590","title":"<i>De no</i>vo finished 2.8 Mbp <i>Staphylococcus aureus</i> genome assembly from 100 bp short and long range paired-end reads","display_name":"<i>De no</i>vo finished 2.8 Mbp <i>Staphylococcus aureus</i> genome assembly from 100 bp short and long range paired-end reads","publication_year":2013,"publication_date":"2013-10-15","ids":{"openalex":"https://openalex.org/W2158477452","doi":"https://doi.org/10.1093/bioinformatics/btt590","mag":"2158477452","pmid":"https://pubmed.ncbi.nlm.nih.gov/24130309"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt590","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt590","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/40/48913229/bioinformatics_30_1_40.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/40/48913229/bioinformatics_30_1_40.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102712406","display_name":"David Hern\u00e1ndez","orcid":"https://orcid.org/0000-0001-5242-9130"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David Hernandez","raw_affiliation_strings":["1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079877718","display_name":"Ryan Tewhey","orcid":"https://orcid.org/0000-0002-4607-8001"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan Tewhey","raw_affiliation_strings":["1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046798754","display_name":"Jean\u2010Baptiste Veyrieras","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean-Baptiste Veyrieras","raw_affiliation_strings":["1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091145511","display_name":"Laurent Farinelli","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laurent Farinelli","raw_affiliation_strings":["1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022213777","display_name":"Magne \u00d8ster\u00e5s","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Magne \u00d8ster\u00e5s","raw_affiliation_strings":["1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010055797","display_name":"Patrice Fran\u00e7ois","orcid":"https://orcid.org/0000-0002-0540-750X"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrice Fran\u00e7ois","raw_affiliation_strings":["1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088214706","display_name":"Jacques Schrenzel","orcid":"https://orcid.org/0000-0001-5464-7764"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacques Schrenzel","raw_affiliation_strings":["1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Genomic Research Laboratory, Infectious Diseases Service, Geneva University Hospitals, 1211 Geneva 4, Switzerland, 2Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA, 3BioM\u00e9rieux, Data and Knowledge Laboratory, 69280 Marcy l'Etoile, France and 4Fasteris SA, PO Box 28, 1228 Plan-les-Ouates, Switzerland","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5102712406"],"corresponding_institution_ids":["https://openalex.org/I123431417"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.7372,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.9403162,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"30","issue":"1","first_page":"40","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/staphylococcus-aureus","display_name":"Staphylococcus aureus","score":0.8796442747116089},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5993690490722656},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45092272758483887},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.42920297384262085},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.40543198585510254},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39940962195396423},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21824035048484802},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.18005526065826416},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10915416479110718}],"concepts":[{"id":"https://openalex.org/C2779489039","wikidata":"https://www.wikidata.org/wiki/Q188121","display_name":"Staphylococcus aureus","level":3,"score":0.8796442747116089},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5993690490722656},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45092272758483887},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.42920297384262085},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.40543198585510254},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39940962195396423},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21824035048484802},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.18005526065826416},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10915416479110718},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btt590","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt590","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/40/48913229/bioinformatics_30_1_40.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24130309","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24130309","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:unige.ch:aou:unige:40259","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:40259","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, vol. 30, no. 1 (2014) p. 40-49","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doc.rero.ch:303308","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:5255551","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6280916","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6280916","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6280916","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt590","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt590","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/1/40/48913229/bioinformatics_30_1_40.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158477452.pdf","grobid_xml":"https://content.openalex.org/works/W2158477452.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1767772592","https://openalex.org/W1966822396","https://openalex.org/W2014286596","https://openalex.org/W2022986961","https://openalex.org/W2023911006","https://openalex.org/W2033292629","https://openalex.org/W2099570444","https://openalex.org/W2099809434","https://openalex.org/W2103441770","https://openalex.org/W2107282968","https://openalex.org/W2107772251","https://openalex.org/W2108234281","https://openalex.org/W2114133992","https://openalex.org/W2117201299","https://openalex.org/W2122710851","https://openalex.org/W2127067063","https://openalex.org/W2136651963","https://openalex.org/W2142749416","https://openalex.org/W2156104322","https://openalex.org/W2157358322","https://openalex.org/W2158714788","https://openalex.org/W2158804744","https://openalex.org/W2161546116","https://openalex.org/W2162098634","https://openalex.org/W2168531624","https://openalex.org/W2170367123","https://openalex.org/W2171467729"],"related_works":["https://openalex.org/W2331760418","https://openalex.org/W4281790352","https://openalex.org/W4243501567","https://openalex.org/W276237299","https://openalex.org/W2384305430","https://openalex.org/W2342726987","https://openalex.org/W2093770231","https://openalex.org/W2050750095","https://openalex.org/W2317186008","https://openalex.org/W2082480737"],"abstract_inverted_index":{"The":[0],"presented":[1],"algorithms":[2],"are":[3],"implemented":[4],"in":[5],"the":[6,13],"standalone":[7],"Edena":[8],"software,":[9],"freely":[10],"available":[11],"under":[12],"General":[14],"Public":[15],"License":[16],"(GPLv3)":[17],"at":[18],"www.genomic.ch/edena.php.":[19]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":5}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}