{"id":"https://openalex.org/W2147973392","doi":"https://doi.org/10.1093/bioinformatics/btt586","title":"SecStAnT: secondary structure analysis tool for data selection, statistics and models building","display_name":"SecStAnT: secondary structure analysis tool for data selection, statistics and models building","publication_year":2013,"publication_date":"2013-10-15","ids":{"openalex":"https://openalex.org/W2147973392","doi":"https://doi.org/10.1093/bioinformatics/btt586","mag":"2147973392","pmid":"https://pubmed.ncbi.nlm.nih.gov/24130306"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt586","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/5/668/48917730/bioinformatics_30_5_668.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/5/668/48917730/bioinformatics_30_5_668.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069198387","display_name":"Giuseppe Maccari","orcid":"https://orcid.org/0000-0002-2894-3583"},"institutions":[{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]},{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]},{"id":"https://openalex.org/I4210087815","display_name":"Istituto Nanoscienze","ror":"https://ror.org/0042e5975","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210087815","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Giuseppe Maccari","raw_affiliation_strings":["1 Center for Nanotechnology and Innovation @NEST, Istituto Italiano di Tecnologia, 2NEST, Istituto Nanoscienze \u2013 CNR and Scuola Normale Superiore, Piazza San Silvestro 12-56127 Pisa and 3Dipartimento di Fisica \u2018E. Fermi\u2019, Universit\u00e0 di Pisa Largo B. Pontecorvo 3-56127 Pisa, Italy"],"affiliations":[{"raw_affiliation_string":"1 Center for Nanotechnology and Innovation @NEST, Istituto Italiano di Tecnologia, 2NEST, Istituto Nanoscienze \u2013 CNR and Scuola Normale Superiore, Piazza San Silvestro 12-56127 Pisa and 3Dipartimento di Fisica \u2018E. Fermi\u2019, Universit\u00e0 di Pisa Largo B. Pontecorvo 3-56127 Pisa, Italy","institution_ids":["https://openalex.org/I4210087815","https://openalex.org/I108290504","https://openalex.org/I30771326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062711070","display_name":"Giulia Lia Beatrice Spampinato","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087815","display_name":"Istituto Nanoscienze","ror":"https://ror.org/0042e5975","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210087815","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]},{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulia L.B. Spampinato","raw_affiliation_strings":["1 Center for Nanotechnology and Innovation @NEST, Istituto Italiano di Tecnologia, 2NEST, Istituto Nanoscienze \u2013 CNR and Scuola Normale Superiore, Piazza San Silvestro 12-56127 Pisa and 3Dipartimento di Fisica \u2018E. Fermi\u2019, Universit\u00e0 di Pisa Largo B. Pontecorvo 3-56127 Pisa, Italy"],"affiliations":[{"raw_affiliation_string":"1 Center for Nanotechnology and Innovation @NEST, Istituto Italiano di Tecnologia, 2NEST, Istituto Nanoscienze \u2013 CNR and Scuola Normale Superiore, Piazza San Silvestro 12-56127 Pisa and 3Dipartimento di Fisica \u2018E. Fermi\u2019, Universit\u00e0 di Pisa Largo B. Pontecorvo 3-56127 Pisa, Italy","institution_ids":["https://openalex.org/I4210087815","https://openalex.org/I108290504","https://openalex.org/I30771326"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025719505","display_name":"Valentina Tozzini","orcid":"https://orcid.org/0000-0002-7586-5039"},"institutions":[{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]},{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]},{"id":"https://openalex.org/I4210087815","display_name":"Istituto Nanoscienze","ror":"https://ror.org/0042e5975","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210087815","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valentina Tozzini","raw_affiliation_strings":["1 Center for Nanotechnology and Innovation @NEST, Istituto Italiano di Tecnologia, 2NEST, Istituto Nanoscienze \u2013 CNR and Scuola Normale Superiore, Piazza San Silvestro 12-56127 Pisa and 3Dipartimento di Fisica \u2018E. Fermi\u2019, Universit\u00e0 di Pisa Largo B. Pontecorvo 3-56127 Pisa, Italy"],"affiliations":[{"raw_affiliation_string":"1 Center for Nanotechnology and Innovation @NEST, Istituto Italiano di Tecnologia, 2NEST, Istituto Nanoscienze \u2013 CNR and Scuola Normale Superiore, Piazza San Silvestro 12-56127 Pisa and 3Dipartimento di Fisica \u2018E. Fermi\u2019, Universit\u00e0 di Pisa Largo B. Pontecorvo 3-56127 Pisa, Italy","institution_ids":["https://openalex.org/I4210087815","https://openalex.org/I108290504","https://openalex.org/I30771326"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5069198387"],"corresponding_institution_ids":["https://openalex.org/I108290504","https://openalex.org/I30771326","https://openalex.org/I4210087815"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4386,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.65934538,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"30","issue":"5","first_page":"668","last_page":"674"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7381578683853149},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6749654412269592},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6505483388900757},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.61906898021698},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.618296205997467},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.5474942922592163},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5012013912200928},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48432743549346924},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4730892777442932},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4509460926055908},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.4498549699783325},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.44198933243751526},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.441516637802124},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.22753754258155823},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14910411834716797}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7381578683853149},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6749654412269592},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6505483388900757},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.61906898021698},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.618296205997467},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.5474942922592163},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5012013912200928},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48432743549346924},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4730892777442932},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4509460926055908},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.4498549699783325},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.44198933243751526},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.441516637802124},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.22753754258155823},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14910411834716797},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt586","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/5/668/48917730/bioinformatics_30_5_668.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24130306","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24130306","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:zenodo.org:100777","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100777","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt586","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/5/668/48917730/bioinformatics_30_5_668.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147973392.pdf","grobid_xml":"https://content.openalex.org/works/W2147973392.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W5642939","https://openalex.org/W1650809028","https://openalex.org/W1967450294","https://openalex.org/W1978159078","https://openalex.org/W1995808589","https://openalex.org/W2017394797","https://openalex.org/W2028263411","https://openalex.org/W2028267792","https://openalex.org/W2035588047","https://openalex.org/W2037159954","https://openalex.org/W2042694939","https://openalex.org/W2046085332","https://openalex.org/W2051381895","https://openalex.org/W2058267477","https://openalex.org/W2059486640","https://openalex.org/W2064690388","https://openalex.org/W2066373790","https://openalex.org/W2070753604","https://openalex.org/W2075403140","https://openalex.org/W2082296224","https://openalex.org/W2095530874","https://openalex.org/W2106881092","https://openalex.org/W2111979569","https://openalex.org/W2118258049","https://openalex.org/W2119267663","https://openalex.org/W2125677968","https://openalex.org/W2131071247","https://openalex.org/W2142694980","https://openalex.org/W2147993766","https://openalex.org/W2159565091","https://openalex.org/W2168708922","https://openalex.org/W2323098947","https://openalex.org/W2991679001","https://openalex.org/W6636978375","https://openalex.org/W6649065937","https://openalex.org/W6662082741","https://openalex.org/W6674391258","https://openalex.org/W6701038832"],"related_works":["https://openalex.org/W2380602769","https://openalex.org/W74790563","https://openalex.org/W2069977755","https://openalex.org/W2385027770","https://openalex.org/W1989227970","https://openalex.org/W2100173257","https://openalex.org/W3033962221","https://openalex.org/W2737894786","https://openalex.org/W2375174984","https://openalex.org/W2382661014"],"abstract_inverted_index":{"SecStAnT":[0],"is":[1,10],"available":[2,12],"free":[3],"of":[4],"charge":[5],"at":[6],"secstant.sourceforge.net/.":[7],"Source":[8],"code":[9],"freely":[11],"on":[13,20],"request,":[14],"implemented":[15],"in":[16],"Java":[17],"and":[18,24],"supported":[19],"Linux,":[21],"MS":[22],"Windows":[23],"OSX.":[25]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
